Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11450 445 / 2e-144 Protein of unknown function (DUF3527) (.1) AT1G63520 205 / 6e-57 Protein of unknown function (DUF3527) (.1) AT5G59020 108 / 8e-24 Protein of unknown function (DUF3527) (.1) AT1G04490 104 / 2e-23 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G33360 104 / 2e-23 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G29510 93 / 3e-19 Protein of unknown function (DUF3527) (.1) AT5G01030 92 / 7e-19 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) AT2G37930 70 / 3e-12 Protein of unknown function (DUF3527) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002006 [exp] 1259 / 0 AT4G11450 477 / 3e-159 Protein of unknown function (DUF3527) (.1) Lus10030065 [exp] 174 / 1e-48 ND / Lus10040056 [exp] 116 / 9e-30 AT5G28823 41 / 2e-04 unknown protein Lus10010518 [exp] 107 / 2e-26 ND / Lus10040721 [exp] 110 / 2e-24 AT5G59020 291 / 1e-86 Protein of unknown function (DUF3527) (.1) Lus10016455 [exp] 110 / 2e-24 AT5G59020 293 / 2e-87 Protein of unknown function (DUF3527) (.1) Lus10014479 [exp] 100 / 1e-21 AT2G33360 287 / 4e-91 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Lus10010400 [exp] 94 / 1e-21 ND / Lus10023729 [exp] 100 / 2e-21 AT2G33360 355 / 9e-115 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104200 [exp] 723 / 0 AT4G11450 530 / 5e-180 Protein of unknown function (DUF3527) (.1) Potri.003G127500 [exp] 701 / 0 AT4G11450 521 / 2e-176 Protein of unknown function (DUF3527) (.1) Potri.009G039300 [exp] 130 / 9e-31 AT5G59020 351 / 1e-107 Protein of unknown function (DUF3527) (.1) Potri.010G066200 [exp] 127 / 4e-30 AT2G33360 333 / 3e-106 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.001G246200 [exp] 126 / 2e-29 AT5G59020 362 / 9e-112 Protein of unknown function (DUF3527) (.1) Potri.008G171400 [exp] 120 / 9e-28 AT2G33360 327 / 1e-103 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.016G105500 [exp] 110 / 3e-24 AT5G01030 257 / 5e-73 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2) Potri.006G093600 [exp] 93 / 4e-19 AT5G01030 219 / 6e-60 Protein of unknown function (DUF3527) (.1), Protein of unknown function (DUF3527) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF12043 [flax] [poplar] DUF3527 Domain of unknown function (DUF3527)
Representative CDS sequence Show only first row Show all	>Lus10035493 pacid=23170648 polypeptide=Lus10035493 locus=Lus10035493.g ID=Lus10035493.BGIv1.0 annot-version=v1.0 ATGGAGTCGCATTTCAAGAAGATTAGCACTTCAGATCTCAGTCCTAATACCGTCCTTCCTACTAGACATTGTTCTGAGGTTGAAAAGAGAACTTCTTATC AGAAACCCCCACGTAAAGATGATGTATTGAGGGTAAAGGAAGGGTTCACAGAGATTAGCTTTCGTCGTTATCGTAGTACTTCTGCCAAGAATGTTCCTTC TAGGCCTTCTGTAATAGCCCCTGCTGTTGAGCTGAAGAGAGGCTCCATGTACCAAAGTTCTAGAGAGGTAAGGAGAATGAAGCATATGGAGTCATGTTAT GATGGAAGGAGGAAGATCGAATTGTCACGTGGCAGCGACAGTGCTTTCTCCTTGGACGTTGTTGAGTCTTTGTGTAGCTCAGATGAAGAGGATGCTCCAA AGGTGCATCCTTCAAATGCTTTAGATGCAAAATTGAGCCTGATATCGTCTCACAAGTCAAGTGTTGACCCTTGTTCCTCAGCTGGCTTTATCGAATTTTG TCCAAATTCAGATGTTAGACAACAACGAGATCCCGGAACAATTGGAAGTCGTTTGAGATATGAGAATCCAGGGTTGAAAAGTGAGAATGTTGCTGGCCCT CAAAATGATGGTAATGACCTTCTTGAAAGAGATGCACCTGCCTTCCACAAAACACTTTCTGCTAAGCTTGAAATGCCTCATTCATCACCTTCTACTTCAG AGAGTGATTGCTCTACTCGTGGAAGCTCTAAGTCGCGATTTGTACCTATCAGAAAGATGTTTGATCCGTTCATCAAGTCCAAGTCTTCAAGGAGTCCATT GAGTTATGTTCCTGAACTAATTAGTGAACAGAAAGAAAACAGTAAGACAGCAGCCATGAGAAGGAATGAGATGCTAAGGAAGTCTTTGTTATATGACTTC CCAAATTCTGCTCGAAATTTGAATATGAAGAAGGATCATAATCATTCAGATGTCTCATGTTCAGCAGTTTACCTGCATGGCTGTCTCAAGCTGAGGAATA AGAACAAGGTGCCATATTTCGAGTTCTCTCTGAGTTCTCCCGAGGAGGTTCTGGTGGCAAAGACATGGAAATTGAGTAATGCTTCCAAGTGGGTATACAT TTTCCACTCCATTTGCAGTAGAAAATGGAGCAATGCTAGTGGCCGAGGTACACCTGAAGATAACAACAATAAAGAGCCCACGGAGGTCGGTCAGATGCAC GTTTCCTCGTACTTGCATTCCGAAGTACAAGATTGTCCACTTTCGGACAACTCAATGGTGACTGAATTTGTGTTGTATGACATTGCACACGCAAGAAACA GTGTTTTACCTTCAGAAGGTTCCCCTGATGTCAAAGCATTCAATGGTGGCTTTCCTTGTCTGGATGGTCGAGTGCACGACTTGAACGAAAACAGGAATAG TTGTGCTAAAACCATTTCTGATTCCACGAGTCCGAATCCATGGCCGATTGCTGGTTTACAGCCAGATCTTGAGATTGCCGCCATTGTTATTCAAATTCCT TTTGCAAAGAGAGAAAGCTTGAAGTACAAGAGAGGTTACAAGGGCAGGAAGAAAGTACATTTAAACCTGCTCAACCTCTCCATGGCCGAGCAGGTTGCAA AGCAAAGTCCTGACAGAGAAAGTTCCGAAAAGGTGAAGGTGGTGATCCCAACTGGAAATCACAGTATGCCAAGTGATGCTGAAAGCCAAGGCCCTTCCTC GTTGCTCGATCGATGGAGGTTTGGTGGAGGCTGTGACTGTGGTGGCTGGGATATGGCTTGCCCCCTTACTGTTTTTGGGAACCCTGACATCCAATGTAGT GAAGATGAACCCCTTGTAGACAAGCAGCAGCCTTTGGAACTTTTGATTCAGGGAACAAAAGAGAGGACACCAGCATTGATGATGAAGGTTGTAGAAGAGG GAGAATATGCCGTTGATTTCCATGCGAAGCTATCGACACTACAAGCATTTTCCATCTGCATCGCCATGCTGCACGGCTCAGAAGCTGCTACTGCGGTTGG GGAGAACATAAGCAAGAAGAAGTTGCCACATTGCAACTCGCTCAAAGTACTCATCGAGGAGGAGGTGAAGTTCTTAATTGATGCAGTGGCTGAGGAAGAA AAAAAGAAACCCTCTAAGAAAATGGAACTCAATAAGCAGCAATCTTACAAGCTCAAACCTCCAATTTCTCCATTTTCTCGGCGTGTGGATCTGACGGCAG ATTGTTTCATCGATGGTGCCTTGAAAATACCCAAGGAAGTATTGGATTTTGGTCTTGTGAGGATGCTGCCAACCTTGGTTGCACAATTTGTTGGCTCAAG CTCGTCGATGCGTGTTTTCGCCTCAATGGCAAACCGTCTATGGGGATATGAAGGAAGTATTACTATATCGATTATATCTCCTGGCTTTTCCCTACTGGAA TTCCCTTCCAAGAATCTGTGTGATTGGGTTTTAGGGCGTATGGGGCATAGTCATCATTTCACCTTGGTTTTGAGACGATGGATCAAAGGAATGAGATGGG TTGTGGCTCATATTGGCCAGCCCATTCGAAGCTATGTGCGTACAAGGCTTGATTTTAAGATTTGCTTTCTTCTCTTTGCCCCCCGCTATCTTGAGTCGAT TGATATAATCCTGGAGGATGGTGAGCGTGTGCAGTTAAATATGAGTTGCCCAACTACTCGATTATATGAAGCTCCTAAACCGACTTGGAGGAAGAAAGTG ATTCAGAAGGATGAAGCTCTGGAGAATACTGTCTCAGAGTAA
AA sequence Show only first row Show all	>Lus10035493 pacid=23170648 polypeptide=Lus10035493 locus=Lus10035493.g ID=Lus10035493.BGIv1.0 annot-version=v1.0 MESHFKKISTSDLSPNTVLPTRHCSEVEKRTSYQKPPRKDDVLRVKEGFTEISFRRYRSTSAKNVPSRPSVIAPAVELKRGSMYQSSREVRRMKHMESCY DGRRKIELSRGSDSAFSLDVVESLCSSDEEDAPKVHPSNALDAKLSLISSHKSSVDPCSSAGFIEFCPNSDVRQQRDPGTIGSRLRYENPGLKSENVAGP QNDGNDLLERDAPAFHKTLSAKLEMPHSSPSTSESDCSTRGSSKSRFVPIRKMFDPFIKSKSSRSPLSYVPELISEQKENSKTAAMRRNEMLRKSLLYDF PNSARNLNMKKDHNHSDVSCSAVYLHGCLKLRNKNKVPYFEFSLSSPEEVLVAKTWKLSNASKWVYIFHSICSRKWSNASGRGTPEDNNNKEPTEVGQMH VSSYLHSEVQDCPLSDNSMVTEFVLYDIAHARNSVLPSEGSPDVKAFNGGFPCLDGRVHDLNENRNSCAKTISDSTSPNPWPIAGLQPDLEIAAIVIQIP FAKRESLKYKRGYKGRKKVHLNLLNLSMAEQVAKQSPDRESSEKVKVVIPTGNHSMPSDAESQGPSSLLDRWRFGGGCDCGGWDMACPLTVFGNPDIQCS EDEPLVDKQQPLELLIQGTKERTPALMMKVVEEGEYAVDFHAKLSTLQAFSICIAMLHGSEAATAVGENISKKKLPHCNSLKVLIEEEVKFLIDAVAEEE KKKPSKKMELNKQQSYKLKPPISPFSRRVDLTADCFIDGALKIPKEVLDFGLVRMLPTLVAQFVGSSSSMRVFASMANRLWGYEGSITISIISPGFSLLE FPSKNLCDWVLGRMGHSHHFTLVLRRWIKGMRWVVAHIGQPIRSYVRTRLDFKICFLLFAPRYLESIDIILEDGERVQLNMSCPTTRLYEAPKPTWRKKV IQKDEALENTVSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	1.0	0.9197
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	3.0	0.9125
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Lus10004896 [exp]	3.5	0.9008
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	3.5	0.9120
AT1G72410			COP1-interacting protein-relat...		Lus10008140 [exp]	4.5	0.9136
AT5G61910			DCD (Development and Cell Deat...		Lus10032534 [exp]	5.7	0.8838
					Lus10010435 [exp]	6.5	0.8773
AT3G26935			DHHC-type zinc finger family p...		Lus10000146 [exp]	6.7	0.8765
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10030005 [exp]	8.1	0.8774
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	8.7	0.9119

Compare expression of checked genes

Lus10035493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.