Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11570 478 / 2e-169 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT3G10970 106 / 2e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G21470 58 / 5e-09 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT2G38740 49 / 2e-06 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G56500 49 / 4e-06 haloacid dehalogenase-like hydrolase family protein (.1) AT3G48420 42 / 0.0004 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002002 [exp] 717 / 0 AT4G11570 491 / 9e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10029053 [exp] 103 / 3e-24 AT3G10970 539 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10034213 [exp] 102 / 5e-24 AT3G10970 537 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10018906 [exp] 76 / 9e-15 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 75 / 1e-14 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018435 [exp] 73 / 5e-14 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10013663 [exp] 55 / 4e-08 AT3G48420 427 / 4e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040116 [exp] 54 / 4e-08 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10003018 [exp] 54 / 5e-08 AT2G38740 355 / 1e-124 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G104366 [exp] 541 / 0 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.003G127100 [exp] 536 / 0 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.019G049000 [exp] 98 / 2e-22 AT3G10970 510 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.002G077200 [exp] 76 / 4e-15 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 71 / 2e-13 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.013G007800 [exp] 50 / 3e-06 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.015G088500 [exp] 46 / 3e-05 AT3G48420 434 / 5e-154 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147400 [exp] 41 / 0.0007 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10035494 pacid=23170495 polypeptide=Lus10035494 locus=Lus10035494.g ID=Lus10035494.BGIv1.0 annot-version=v1.0 ATGGCGGATTCAATTGCAGCAACTTCTGTTGTTGGTTACAGGCCGCTTGTTTCTAGGTCTGCAGCTAAAGATGCTTCCTTTAGTAAGCAACAACAACGTT CATATAACTCTAGGCTGCCTCTAACCCACTTTATGGGCAGGAAGGCTATTAGTCTGTCTTCATCTTGCCTTAGATCCAGGGTCAATGTTAGGAAGAACAC ATCAATCAAGGCCCTTGCCATGGAGCTAACAAAAGAGGCGTATGCATATAAAGAAGACATCAAAACTCCCAAGAGTTGGAAAAATGATCAGGATTTGGAT GTTGATAGGAAGCCTGGTGGTGTGTGGCCTCCAGAGAATAGGGCGGATAACCCTTCATTGCATAACCCTTTGCTCAGGCAAGAAAGGATGGGTTGCGGTT GGTTAGGTGCCATATTCGAATGGGAAGGTGTTATAATTGAAGATAATCCCGAGCTTGAGAAGCAAGCCTGGCTTGCACTTGCTCAGGAGGAAGGCAAGTC CCCTCCCCCGGGTTTCGTTCTCAGGCGGATAGAAGGGATGAAGAATGAACAGGCAATGTCCGAAGTTCTTTGTTGGTCTAGGGATGCATCTGAGCTTAGG AGAATGGCTGCTAAGAAGGAAGACATTTATCAAGCCTTGCAAGGTGGGATATACAGATTGCGCGACGGTTCCAGAGAGTTTGTGAACGTCCTGATGCAGT ACAAGATACCGATGGCGTTGGTTTCGACTCGTCCCAGAAAGACTCTCGACAATGCGATTTCCAAAATCGGAATTGAAGGCAGCTTCAGCGTTATTATAGC AGCTGAAGATGTCCATAGGGGGAAGCCTGATCCGGAGATGTTTATATACGCGGCACAGCTACTGCAGTTCATCCCGGAGAGGTGCATTGTGTTTGGGAAC TCGAATCAGACAGTGGAGGCTGCCCATGAAGTGCGCATGAAATGTGTTGCTGTTGCTAGCAAACACGCAGTGTATGAGCTTGGAGCTGCTGATCTGGTAG TAAGGAGGCTGGATGAGCTTTCCATCGTGGATCTGAAGAACCTTGCTGATATTGATTCACCGGAATTTGGGTCTCCAGAGCCGGAAATGGAACTGGAGGA TGAGGAAGAGGATTCACCTAGAGGAAGAGGAGTAGGAGTTGATGACATATTCTGGTAA
AA sequence Show only first row Show all	>Lus10035494 pacid=23170495 polypeptide=Lus10035494 locus=Lus10035494.g ID=Lus10035494.BGIv1.0 annot-version=v1.0 MADSIAATSVVGYRPLVSRSAAKDASFSKQQQRSYNSRLPLTHFMGRKAISLSSSCLRSRVNVRKNTSIKALAMELTKEAYAYKEDIKTPKSWKNDQDLD VDRKPGGVWPPENRADNPSLHNPLLRQERMGCGWLGAIFEWEGVIIEDNPELEKQAWLALAQEEGKSPPPGFVLRRIEGMKNEQAMSEVLCWSRDASELR RMAAKKEDIYQALQGGIYRLRDGSREFVNVLMQYKIPMALVSTRPRKTLDNAISKIGIEGSFSVIIAAEDVHRGKPDPEMFIYAAQLLQFIPERCIVFGN SNQTVEAAHEVRMKCVAVASKHAVYELGAADLVVRRLDELSIVDLKNLADIDSPEFGSPEPEMELEDEEEDSPRGRGVGVDDIFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	0	1
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	1.4	0.8516
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10025788 [exp]	1.7	0.8747
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10037370 [exp]	5.0	0.8391
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10018942 [exp]	6.2	0.7962
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	8.8	0.8255
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10013475 [exp]	9.2	0.8400
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	10.6	0.7992
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	10.7	0.8501
AT4G25670			unknown protein		Lus10027511 [exp]	14.9	0.8301
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	18.0	0.8007

Compare expression of checked genes

Lus10035494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.