Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23100 858 / 0 ATECS1, CAD2, GSH1, PAD2, RML1, GSHA ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002001 [exp] 1049 / 0 AT4G23100 858 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G126900 [exp] 894 / 0 AT4G23100 881 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3) Potri.001G104500 [exp] 890 / 0 AT4G23100 865 / 0.0 ROOT MERISTEMLESS 1, PHYTOALEXIN DEFICIENT 2, CADMIUM SENSITIVE 2, glutamate-cysteine ligase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0286 [flax] [poplar] GCS PF04107 [flax] [poplar] GCS2 Glutamate-cysteine ligase family 2(GCS2)
Representative CDS sequence Show only first row Show all	>Lus10035496 pacid=23170673 polypeptide=Lus10035496 locus=Lus10035496.g ID=Lus10035496.BGIv1.0 annot-version=v1.0 ATGGCGGCAATCTTCTCGCAGACCGGTCCATCGCATACCCTCCCTACAGAGGTTGTGCAATGTAAAGGTGGGTTTTTTCTCGCAGCTCAACTTCTCGAGT CATCTAAACTAAGGGAAACGGGTCTCAGAGTGTCCTCATCATCATATGAATCTACCAAAAGATGCGGCATGCTGAGGTTGGACTCTCCATTTAAGGGGGC AAAGCGAGGACATGAGCTTATTGTTGCAGCAAGCCCTCCGACAGAAGATGCCGTGGTTGCTACTGATCCACTAACGAAAGAGGATCTTGTAGGATACCTT GCCTCCGGCTGCAAACCTAAAGATAAATGGAGGATAGGCACAGAACATGAGAAGTTTGGTTTCGAGTCTGGAAGTTTACGCCCAATGAGATATGAACAAA TTTCGGAGTTGCTTAACAGTATTGCTGAGAGATTTGATTGGGATAAAGTAATGGAAGATGGCAACATTATAGGACTCAAGCAGGGTATGCAGAGTATATC ACTAGAGCCCGGTGGTCAGTTTGAACTCAGTGGTGCACCTCTTGAAACTTTGCATCAAACTTGTGCTGAGGTTAACTCACACCTGTATCAGGTAAAAGCT GTTGCAGAAGAAATGGGAATCGGATTCTTAGGAATTGGGTTCCAGCCCAAGTGGGGAATCAAAGACATACCTATCATGCCAAAGGGTAGATATAATATCA TGAGGAACTATATGCCTAAGGTTGGCACACTTGGACTAGATATGATGTTCAGGACGTGCACTGTTCAGGTCAATCTGGACTTCAGTTCAGAAGCTGACAT GATAAGGAAATTCCGCGCTGGCCTAGCTTTACAGCCGATTGCAACGGCTCTTTTTGCTAATTCGCCTTTTACTGAAGGAAAGCCAAATGGTTATCTCAGC ATGAGAAGCCATATATGGATTGATACTGATAGGAACCGGACAGGCATGTTACCATTCGTCTTTGATGACTCCTTTGGGTTTGAACAGTATGTTGATTATG CTCTCGATGTTCCCATGTATTTTATTTACCGCAAGAAGAGATATGTTGACTGTACTGGAATGTCTTTCCGGGACTTTATGGCTGGCAAACTTCCTTGTCT TCCTGGTGAATTGCCTACCCTTAACGACTGGGAGAATCATCTAACAACAATATTTCCGGAGGTTAGGCTGAAAAGGTACTTGGAGATGAGGGGTGCTGAT GGAGGACCCTGGAGGCGGCTGTGTGCCTTGCCAGCATTTTGGGTTGGACTGTTGTATGATGAGGTATCCCTTCAAAATGTTCTTGACTTGGTTGCTGACT GGACACCTGAAGAAAGGCAAATGCTGAGAGATAAGGTGCCAAGGTTGGGCTTAAAGACGGCATTTCGTGACGGATTTCTTAAGCACGTTGCTGAAGATGT TGTAAAGCTGGCCAAGGATGGACTAGAAAGAAGAGGATTCAAGGAGGTTGGATTCTTGAACGAGGTGGCTGAAGTGGTCAGGACAGGTGTGACACCGGCA GAGAAGCTTCTGGATATGTACAATGGAAAATGGGGGCAATCAGTTGATCCTGTATTTGAGGAGCTACTTTACTGA
AA sequence Show only first row Show all	>Lus10035496 pacid=23170673 polypeptide=Lus10035496 locus=Lus10035496.g ID=Lus10035496.BGIv1.0 annot-version=v1.0 MAAIFSQTGPSHTLPTEVVQCKGGFFLAAQLLESSKLRETGLRVSSSSYESTKRCGMLRLDSPFKGAKRGHELIVAASPPTEDAVVATDPLTKEDLVGYL ASGCKPKDKWRIGTEHEKFGFESGSLRPMRYEQISELLNSIAERFDWDKVMEDGNIIGLKQGMQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKA VAEEMGIGFLGIGFQPKWGIKDIPIMPKGRYNIMRNYMPKVGTLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLS MRSHIWIDTDRNRTGMLPFVFDDSFGFEQYVDYALDVPMYFIYRKKRYVDCTGMSFRDFMAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGAD GGPWRRLCALPAFWVGLLYDEVSLQNVLDLVADWTPEERQMLRDKVPRLGLKTAFRDGFLKHVAEDVVKLAKDGLERRGFKEVGFLNEVAEVVRTGVTPA EKLLDMYNGKWGQSVDPVFEELLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10035496 [exp]	0	1
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Lus10019153 [exp]	10.9	0.8293
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10020654 [exp]	25.8	0.7810
AT3G23950			F-box family protein (.1)		Lus10040838 [exp]	113.5	0.7258
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10006650 [exp]	248.7	0.7093
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015130 [exp]	261.8	0.7143

Compare expression of checked genes

Lus10035496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.