Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12250 822 / 0 TUB6 beta-6 tubulin (.1) AT5G62700 821 / 0 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 821 / 0 TUB2 tubulin beta chain 2 (.1) AT5G23860 819 / 0 TUB8, b-TUB tubulin beta 8 (.1.2) AT1G75780 816 / 0 TUB1 tubulin beta-1 chain (.1) AT2G29550 813 / 0 TUB7 tubulin beta-7 chain (.1) AT1G20010 811 / 0 TUB5 tubulin beta-5 chain (.1) AT5G44340 808 / 0 TUB4 tubulin beta chain 4 (.1) AT4G20890 805 / 0 TUB9 tubulin beta-9 chain (.1) AT1G64740 371 / 4e-125 TUA1 alpha-1 tubulin (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002000 [exp] 876 / 0 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10008528 [exp] 849 / 0 AT5G12250 837 / 0.0 beta-6 tubulin (.1) Lus10036069 [exp] 823 / 0 AT5G12250 914 / 0.0 beta-6 tubulin (.1) Lus10026813 [exp] 823 / 0 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10021094 [exp] 823 / 0 AT1G75780 857 / 0.0 tubulin beta-1 chain (.1) Lus10017217 [exp] 821 / 0 AT1G75780 854 / 0.0 tubulin beta-1 chain (.1) Lus10023348 [exp] 820 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10038458 [exp] 820 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10027476 [exp] 818 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G126800 [exp] 841 / 0 AT5G12250 815 / 0.0 beta-6 tubulin (.1) Potri.001G104600 [exp] 834 / 0 AT5G12250 831 / 0.0 beta-6 tubulin (.1) Potri.016G033200 [exp] 825 / 0 AT5G12250 862 / 0.0 beta-6 tubulin (.1) Potri.009G067100 [exp] 825 / 0 AT5G12250 852 / 0.0 beta-6 tubulin (.1) Potri.001G272700 [exp] 823 / 0 AT5G62700 849 / 0.0 tubulin beta chain 3 (.1) Potri.006G035400 [exp] 822 / 0 AT5G12250 860 / 0.0 beta-6 tubulin (.1) Potri.001G272800 [exp] 822 / 0 AT5G62700 857 / 0.0 tubulin beta chain 3 (.1) Potri.001G246900 [exp] 822 / 0 AT5G62700 858 / 0.0 tubulin beta chain 3 (.1) Potri.001G464400 [exp] 821 / 0 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1) Potri.009G040200 [exp] 820 / 0 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0442 [flax] [poplar] Tubulin_C PF03953 [flax] [poplar] Tubulin_C Tubulin C-terminal domain CL0566 [flax] [poplar] Tubulin PF00091 [flax] [poplar] Tubulin Tubulin/FtsZ family, GTPase domain
Representative CDS sequence Show only first row Show all	>Lus10035497 pacid=23170461 polypeptide=Lus10035497 locus=Lus10035497.g ID=Lus10035497.BGIv1.0 annot-version=v1.0 ATGAGAGAAATCCTGCACATCCAAGCAGGTCAATGTGGGAACCAAATTGGTGGTAAGTTCTGGGAAGTGGTGTGCAATGAACATGGGATTGATCCCACTG GCAAGTACGTGGGAGAAGATCCCAAAGGTCATCAGCTGGAGAGGGTGAATGTGTACTACAATGAAGCCAGCGGCGGGAGATACGTCCCAAGAGCTGTCCT TCTCGACTTGGAGCCAGGCACCATGGACAGCTTGAGAACCGGTCCTTTCGGCAACATCTTCAGGCCTGACAACTTTGTCTTCGGCCAGAATGGTGCTGGT AACAACTGGGCTAAAGGCCATTACACTGAAGGTGCTGAGCTTATTGATTCTGTCCTCGATGTTGTCCGCAAGGAAGCTGAGAACTGTGATTGTCTGCAAG GGTTTCAGGTGTGCCATTCGCTAGGAGGAGGTACAGGTTCCGGGATGGGTACACTGCTGATATCAAAGATCAGGGAAGAATACCCAGACAGGATGATGCT CACATTCTCAGTATTCCCATCTCCTAAGGTCTCTGACACTGTGGTTGAGCCTTACAATGCTACCCTCTCTGTGCATCAGCTTGTTGAGAATGCTGATGAG TGTATGGTCCTAGACAATGAAGCCCTCTATGACATCTGCTTCAGAACCCTCAAGCTCACCAACCCTAGCTTCGGAGATCTGAACCACCTGATCTCAACAA CGATGAGCGGAGTTACCTGCTGTCTGCGGTTCCCGGGGCAATTGAACTCCGACCTCCGGAAGTTGGCCGTAAACCTAATTCCATTCCCGAGGCTGCACTT CTTCATGGTGGGATTCGCTCCCTTGACATCCCGTGGATCTCAGCAGTACCGCTCCTTGACAATCCCGGAGCTGACTCAGCAGATGTGGGACTCCAAGAAC ATGATGTGCGCCGCTGATCCAAGGCACGGGAGGTACCTGACGGCTTCGGCGATGTTCAGGGGAAAGATGAGCACCAAAGAAGTGGACGAGCAGATGATAA ATGTGCAGAACAAGAACTCGTCCTACTTCGTGGAGTGGATCCCTAACAACGTGAAGTCAAGCGTGTGCGACGTGCCGCCGACGGGGCTGGCGATGTCGTC GACCTTCGTTGGGAACTCGACGAGCATACAGGAGATGTTCAGGAGGGTGTCGGAGCAGTTCACGGTGATGTTCAGGAGGAAGGCTTTCTTGCATTGGTAT ACAGGGGAAGGGATGGATGAGATGGAGTTCACTGAGGCTGAGAGTAATATGAACGATCTGGTGTCGGAATACCAGCAGTACCAGGACGCCGTTGCCGACG GGGATGAGCTTGACGATGAGGAGGAAGAGCTCGACGGAGATCATTATTGA
AA sequence Show only first row Show all	>Lus10035497 pacid=23170461 polypeptide=Lus10035497 locus=Lus10035497.g ID=Lus10035497.BGIv1.0 annot-version=v1.0 MREILHIQAGQCGNQIGGKFWEVVCNEHGIDPTGKYVGEDPKGHQLERVNVYYNEASGGRYVPRAVLLDLEPGTMDSLRTGPFGNIFRPDNFVFGQNGAG NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADE CMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTIPELTQQMWDSKN MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDVPPTGLAMSSTFVGNSTSIQEMFRRVSEQFTVMFRRKAFLHWY TGEGMDEMEFTEAESNMNDLVSEYQQYQDAVADGDELDDEEEELDGDHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	0	1
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	1.0	0.9333
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015156 [exp]	2.0	0.8604
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10009263 [exp]	2.4	0.8486
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	3.0	0.8929
AT4G35320			unknown protein		Lus10001621 [exp]	3.2	0.9003
AT5G55960			unknown protein		Lus10022565 [exp]	4.9	0.8447
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10009825 [exp]	5.3	0.8399
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037456 [exp]	5.5	0.8454
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	5.9	0.8483
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	8.0	0.8475

Compare expression of checked genes

Lus10035497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.