Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02850 206 / 1e-61 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 194 / 3e-57 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT4G32500 86 / 4e-19 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT4G22200 85 / 1e-18 AKT3, AKT2/3 potassium transport 2/3 (.1) AT2G26650 79 / 8e-17 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 76 / 7e-16 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT2G14255 60 / 3e-10 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G03430 57 / 1e-09 Ankyrin repeat family protein (.1) AT4G27780 55 / 1e-08 ACBP2 acyl-CoA binding protein 2 (.1) AT3G58760 55 / 1e-08 Integrin-linked protein kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001999 [exp] 355 / 8e-118 AT3G02850 970 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10015687 [exp] 187 / 1e-54 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 188 / 2e-54 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10019442 [exp] 88 / 9e-20 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 88 / 1e-19 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 87 / 3e-19 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10017765 [exp] 84 / 1e-18 AT2G26650 395 / 1e-130 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019944 [exp] 80 / 4e-17 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10015474 [exp] 78 / 3e-16 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G043000 [exp] 217 / 2e-65 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.017G135400 [exp] 208 / 3e-62 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 206 / 2e-61 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.006G154600 [exp] 96 / 1e-22 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.018G071400 [exp] 90 / 1e-20 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.018G031600 [exp] 83 / 3e-18 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 81 / 3e-17 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.006G249900 [exp] 80 / 4e-17 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.009G070700 [exp] 64 / 6e-13 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.010G161300 [exp] 61 / 6e-11 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10035498 pacid=23170572 polypeptide=Lus10035498 locus=Lus10035498.g ID=Lus10035498.BGIv1.0 annot-version=v1.0 ATGATGAAGAGGAACGGGGAAGGACGCGCTGCAGCTGGGAGAAGAAGAACGGACGGCGGCGTTCAAGGGTATCCAGGAACACCCAAAAAACTCGACAACG ACATGCCTCTTGGGGTCCTCCCACTCAGAGGCAAGGACCCCAATCTCAGGAAGACAATATTAGAATCATACGTGACGCTTGACATCATAAAGTCTGAACC GGAGTTGGTTACGAGGTTGAACTCCGTTGCATTCGATGGAGATTTGTACAAACTAAAACGTCTAGTTACTGGAGGAGGCCTTGATCCTAAGAGGACAGAT TACAATGGAAGATCACCTTTGCATGTTGCTTCATCTAAAGGGTTTAAGGACATAACCCTTTTCCTTATCGGGCAAGGACTGGAGATTAACATTTCAGATA ACTTTGGAAACACTCCTTTGCTCGAAGCTGTAAAGCACGGCCACGAAGAAGTGGCATTGTTACTCATGAAAGAGGGAGCAACACTTGCTACCATGGAAGA AGAAGGTGGTGATTTCCTTTGTAAGACCATTGCTAGAAGAGAATTCGATCTCTTGAAGAGAGCTTTGGGTTGTGGTGTAAACTACAATGCACGAAACTAC GACGGCAGGACAGCTCTTCACGTTGCAGCTTCGCAAGGGCTATGTGCATTTGCATGCTTACTTGTAGATGCAGGAGCTAATGTGCTGGCCAAAGATTGGT AA
AA sequence Show only first row Show all	>Lus10035498 pacid=23170572 polypeptide=Lus10035498 locus=Lus10035498.g ID=Lus10035498.BGIv1.0 annot-version=v1.0 MMKRNGEGRAAAGRRRTDGGVQGYPGTPKKLDNDMPLGVLPLRGKDPNLRKTILESYVTLDIIKSEPELVTRLNSVAFDGDLYKLKRLVTGGGLDPKRTD YNGRSPLHVASSKGFKDITLFLIGQGLEINISDNFGNTPLLEAVKHGHEEVALLLMKEGATLATMEEEGGDFLCKTIARREFDLLKRALGCGVNYNARNY DGRTALHVAASQGLCAFACLLVDAGANVLAKDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	0	1
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10014820 [exp]	1.0	0.9409
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	2.0	0.9338
AT3G54200			Late embryogenesis abundant (L...		Lus10031555 [exp]	3.5	0.9289
AT1G34050			Ankyrin repeat family protein ...		Lus10024844 [exp]	3.5	0.9249
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	4.5	0.9272
AT2G34290			Protein kinase superfamily pro...		Lus10035236 [exp]	4.7	0.8960
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10027870 [exp]	5.2	0.8857
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10001999 [exp]	5.2	0.9329
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10028047 [exp]	6.2	0.8715
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10009557 [exp]	6.7	0.9182

Compare expression of checked genes

Lus10035498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.