Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06839 348 / 4e-118 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G08320 286 / 1e-94 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06960 283 / 5e-94 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT3G12250 281 / 1e-93 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 282 / 2e-93 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT1G68640 278 / 3e-90 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT1G77920 244 / 3e-78 bZIP bZIP transcription factor family protein (.1) AT1G22070 238 / 1e-75 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G10030 233 / 1e-73 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT5G65210 228 / 1e-72 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023822 [exp] 410 / 2e-141 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10024140 [exp] 313 / 2e-105 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 313 / 2e-105 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 302 / 4e-101 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10027802 [exp] 278 / 3e-94 AT5G06839 208 / 1e-66 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10004876 [exp] 285 / 1e-91 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 283 / 4e-91 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10041475 [exp] 278 / 1e-89 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10043387 [exp] 275 / 7e-89 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G058800 [exp] 394 / 1e-134 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 377 / 1e-128 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.006G039000 [exp] 308 / 9e-102 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 306 / 4e-101 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.008G118300 [exp] 305 / 7e-101 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.003G194600 [exp] 303 / 2e-99 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.001G029800 [exp] 300 / 1e-98 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.009G164300 [exp] 282 / 4e-91 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 281 / 5e-91 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.005G170500 [exp] 248 / 9e-80 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10035499 pacid=23147344 polypeptide=Lus10035499 locus=Lus10035499.g ID=Lus10035499.BGIv1.0 annot-version=v1.0 ATGAACAGCAGCAGCAACAACAACAACAAGAATAGTAATGATAATTATAATTATAACCATATACAGCAGCGTCAACTAATTCCTTATGATCATATGGGAG ATTTGGATCAAGCCCTGCTGTTGTATCTTGACGACGCCCATGGCCATAGTCAACAGCAAAACGACGCCGTCGCCGATAGTTCATCAAATCCCCAAGAACA ACAGCAGCAGCAAGGACGAATCAGCACTAGCAGCCCACCTCCAACTCTCAGCATCTTCCCTTCTCACCCTATGCACTCTCCAACGTTGAGGCGACTTGCT CAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCCGTAAAAAGACTTATGTTCAGCAGTTGGAGTCAAGTAGAATCAAGCTTACCCAATTTGAACAAGAGC TACATAGAGCTCGAGCCCAAGGCATGTTCTTTAATGGAGGTGGTGGAATTATAGGCGGTGACCAGACCATCCCGGTGATCGGCAATATCAGCACTACTGA CGCGGCTGTGTCTGACATGGAGTACGGGAGGTGGCTGGAGGAGCACCACCGGCTGACGTGCGAGCTGAGGGCGGCGGTGCAAGAGCACCTGCCGGAGAAC GAGCTCAAGATGTACGTCGACAACTGCCTAGCCCACTACGACGTCGTTATGAACCTTAAAGGAATGGCGGCCAAAGCGGACGTCTTCCATTTGGTGTCCG GGATGTGGAAGACGCCAGCCGAGCGTTGCTTCATGTGGATCGGCGGCTTCCGCCCTTCCGATCTCATCAAGGTAATAGTGAGCCAGATAGAGCCACTAAC GGAGCAGCAAATCCTTGGGGTATGCGGATTGCAACAGTCGACCCAGGAAGCCGAGGAAGCCCTGTCACAAGGGCTCGAAGCGCTCAACCAGTCGATTACG GAGACGATAGCTTCAGACTCGTTGATCAACTCCCCTCCGACGAACATGGCCAACTACATGGGTCAGATGGCCTTGGCCATCAACAAGCTCTCTACCATCG AAGGCTTCGTACGACAGGTACGTGTAGCCGTACACAATCCCATGCATCTATATTTGAGAAATCGAGAATTTGTACCATCGTCTCAATAA
AA sequence Show only first row Show all	>Lus10035499 pacid=23147344 polypeptide=Lus10035499 locus=Lus10035499.g ID=Lus10035499.BGIv1.0 annot-version=v1.0 MNSSSNNNNKNSNDNYNYNHIQQRQLIPYDHMGDLDQALLLYLDDAHGHSQQQNDAVADSSSNPQEQQQQQGRISTSSPPPTLSIFPSHPMHSPTLRRLA QNREAARKSRLRKKTYVQQLESSRIKLTQFEQELHRARAQGMFFNGGGGIIGGDQTIPVIGNISTTDAAVSDMEYGRWLEEHHRLTCELRAAVQEHLPEN ELKMYVDNCLAHYDVVMNLKGMAAKADVFHLVSGMWKTPAERCFMWIGGFRPSDLIKVIVSQIEPLTEQQILGVCGLQQSTQEAEEALSQGLEALNQSIT ETIASDSLINSPPTNMANYMGQMALAINKLSTIEGFVRQVRVAVHNPMHLYLRNREFVPSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10035499 [exp]	0	1
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031234 [exp]	3.2	0.8284
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035807 [exp]	5.1	0.8383
AT5G62840			Phosphoglycerate mutase family...		Lus10030165 [exp]	6.3	0.7620
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10005284 [exp]	10.2	0.7515
AT1G72940			Toll-Interleukin-Resistance (T...		Lus10041605 [exp]	11.0	0.7679
AT5G43120			ARM-repeat/Tetratricopeptide r...		Lus10018706 [exp]	18.2	0.7022
AT5G05340			Peroxidase superfamily protein...		Lus10009936 [exp]	31.0	0.7393
					Lus10005025 [exp]	31.3	0.7638
					Lus10014090 [exp]	32.1	0.7711
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10007102 [exp]	68.4	0.7007

Compare expression of checked genes

Lus10035499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.