Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59440 318 / 4e-108 ATTMPK.2, ATTMPK.1, ZEU1 ZEUS1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027801 [exp] 411 / 1e-145 AT5G59440 330 / 4e-116 ZEUS1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334900 [exp] 363 / 7e-126 AT5G59440 313 / 3e-108 ZEUS1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02223 [flax] [poplar] Thymidylate_kin Thymidylate kinase
Representative CDS sequence Show only first row Show all	>Lus10035500 pacid=23147590 polypeptide=Lus10035500 locus=Lus10035500.g ID=Lus10035500.BGIv1.0 annot-version=v1.0 ATGTTTAACTCTGTTAAATTGCTAATAAATGCCCGCCAGAAAGCTCTGGGCCATATAGGTAGTTTCTACAGTTCGGTGAAAAGGCTTGAGCCCGTAGCCC AGCTCACTGTCAGGCTTGAGCCCGTATCCCAGCTCACTGTCAAGGTCTTCAATGGAATGAACACGAAGCGAAAACACTCGAATCAAAAAGCGCGCAATTT CTTCCATCGTCATTGGCTGCCGACCGAATTCCGGCAATTCCAAGTCTCTTGTTTCCTCCTAGCTTCACGTCAATTTTCTCGGCTAGCAGTTGTTTCCCCT GTTTATTTTGTATACTCAGACTGTGATTGTGCTCTTTTTGAAGCTGTTGGGCAATTTGGTATGATACAGACATGCTATTCCACATGTTCTAAAGCTGTAA ACTTCGGTGGCTTGCTGGCGAGAAGGTCCTTGATAGGTAGTCTGAATCATCCTAGGAAGTGTGTGTTCAGGTCGATTAGGATGGAGGGTGATGGTAGAAA CATCAGCAAGGGAAGTGATCCTAGAGGAGCTTTGATAGTTCTAGAAGGATTGGATAGGAGCGGGAAGACTTCACAGTCTGCTAGATTGGTCACTTACTTG GAAGGCGCAGGACATTCTGCCGAACTGTGGCGATTCCCTGATAGGACGACTAGTGTTGGGCAGATGATTTCTGCTTATCTTTCGAATGAATCTCAGCTGG ATGATCACACTATCCATCTTCTCTTCAGTGCCAATCGATGGGAGAAGAGGTCATTGATGGAAGCTAAATTGAAGAGCGGAACCACTCTGATTGTAGACCG TTACTCTTATTCTGGTGTGGCATTCTCGTCAGCTAAGGGACTCGATCTTGCTTGGTGTAAGACTCCTGAATTTGGGTTGCCAGCTCCAGATCTGGTTCTG TACCTCGACATACCACCTGAGAAAGCTGCAGAGAGAGGGGGCTATGGAGGTGAACGATACGAGCAGCTTGAATTTCAAAAGAAGGTTGCCGAATGCTATC GTGCCCTCCGTGATTCTTCTTGGCAGACCATCGATGCGTGTCGGCCAATCGAGGAGATTGAGAAGGAGCTGCAGAGCATAGTGCTGGACAGTGTTGCGGC ATGCAAAAAGGGGAAATCCATTTCCCACCTCTGGTCAAGTTAA
AA sequence Show only first row Show all	>Lus10035500 pacid=23147590 polypeptide=Lus10035500 locus=Lus10035500.g ID=Lus10035500.BGIv1.0 annot-version=v1.0 MFNSVKLLINARQKALGHIGSFYSSVKRLEPVAQLTVRLEPVSQLTVKVFNGMNTKRKHSNQKARNFFHRHWLPTEFRQFQVSCFLLASRQFSRLAVVSP VYFVYSDCDCALFEAVGQFGMIQTCYSTCSKAVNFGGLLARRSLIGSLNHPRKCVFRSIRMEGDGRNISKGSDPRGALIVLEGLDRSGKTSQSARLVTYL EGAGHSAELWRFPDRTTSVGQMISAYLSNESQLDDHTIHLLFSANRWEKRSLMEAKLKSGTTLIVDRYSYSGVAFSSAKGLDLAWCKTPEFGLPAPDLVL YLDIPPEKAAERGGYGGERYEQLEFQKKVAECYRALRDSSWQTIDACRPIEEIEKELQSIVLDSVAACKKGKSISHLWSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10035500 [exp]	0	1
AT5G18790			Ribosomal protein L33 family p...		Lus10012786 [exp]	8.4	0.8424
AT5G50810		TIM8	translocase inner membrane sub...		Lus10022450 [exp]	14.9	0.8337
AT3G49100			Signal recognition particle, S...		Lus10018775 [exp]	20.0	0.8247
AT3G52390			TatD related DNase (.1.2)		Lus10013590 [exp]	22.2	0.8153
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10005615 [exp]	27.1	0.8146
AT4G04190			unknown protein		Lus10006268 [exp]	32.0	0.7073
AT5G12110			Glutathione S-transferase, C-t...		Lus10026784 [exp]	33.1	0.7966
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019681 [exp]	37.1	0.7984
AT2G44860			Ribosomal protein L24e family ...		Lus10020552 [exp]	37.2	0.7885
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10000975 [exp]	39.0	0.8117

Compare expression of checked genes

Lus10035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.