Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12150 334 / 1e-111 unknown protein AT2G32060 185 / 5e-57 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) AT1G15930 178 / 4e-54 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027799 [exp] 501 / 7e-177 AT3G12150 556 / 0.0 unknown protein Lus10023826 [exp] 375 / 9e-128 AT3G12150 577 / 0.0 unknown protein Lus10027800 [exp] 239 / 1e-77 AT2G32060 197 / 3e-66 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10021026 [exp] 239 / 3e-75 AT3G12150 392 / 4e-137 unknown protein Lus10021027 [exp] 220 / 2e-70 AT2G32060 192 / 4e-64 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Lus10023825 [exp] 185 / 1e-55 AT2G32060 168 / 3e-53 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049700 [exp] 351 / 2e-118 AT3G12150 615 / 0.0 unknown protein Potri.006G058400 [exp] 347 / 1e-116 AT3G12150 623 / 0.0 unknown protein Potri.002G056200 [exp] 216 / 6e-69 AT2G32060 201 / 9e-68 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.005G206300 [exp] 211 / 5e-67 AT2G32060 201 / 2e-67 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.001G046600 [exp] 204 / 2e-64 AT2G32060 194 / 8e-65 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3) Potri.003G181200 [exp] 204 / 2e-64 AT2G32060 188 / 1e-62 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CL0028 [flax] [poplar] AB_hydrolase PF09752 [flax] [poplar] DUF2048 Abhydrolase domain containing 18
Representative CDS sequence Show only first row Show all	>Lus10035501 pacid=23147371 polypeptide=Lus10035501 locus=Lus10035501.g ID=Lus10035501.BGIv1.0 annot-version=v1.0 ATGGTGTCTGTCAACATTGGAATGCTGCATTATGTGTTGGATCACATCTATGGAGCGTGGCCTCTCAGTATGGTTCAGCCTAACTGGAGGACTATTTGGG AGAGCAAGACTGCTTGTTTAAAGGAAGGAGTGTTTATGACTCCCTGTGATGAGGAGATTGTCAGTGCATTGCCCCCCGAGAGCCGAACTGCTCGAGTTGC TTTCCTTGCTCCGAAATCGGGGCCCAGGGAAAGGATGGCTTGTGTCGTTCATCTTGCTGGCACCAGAGATCACACCTACGAGTGTAGGTTACGCCTTGCT GCACCATTGCTGAAGGACAACATTGCAACCATGGTGTTGGAAAGGCGTCCGATGATGCAGCAGGGTGCCAAACTCTTATGTGTTCGTGACTTGCTTCTTT TGGGTAAAGCAACTATTGAGGAAGCCAGTAGTCTCTTACACTGGTTAGATGCCAAAGCAGGTTTTGGAAAGTTAGGCATCTGTGGCCTTAGCATGGGTAA GAACCAAATTAAGAACCATATAATGCCTACTCGGATATCTCCAGGATCTCCTGAATTAGGTTTTTACGAGTTCTCGTTTCATCTAGGTGGCGTTCATGCT GCGATGGTTGGATCGTTGCACCCAACGCCTGTTGCGACTCTCCCTTTCCTTTCCCCACACTCTGCCGTGGTCGCATTCTGTGAAGGTATTCTACAACATG GCACTGCTTGGGAGGCTCTGAGAGCCGATCTCGCGGAGCAAGTAGCTGCAATGACCCTCGAACAGGTGCGAGAACGGATGCGCACCGTGCACTCTCTCAC CGATGTCACTCGTTTTCCTGCCCCAAAGATCCAGAGGCGGTTATTTTCGTCGCTGCAACTCTTGATCGCTAAAGAAGTATTCTCTGTGACCAACAGCCAG AAAGCCAAGATGTCGGGTGAAGAAGTTGCCGTCCAACAGCCTGAGGCTCCTCCGGCCGCAGCCCCTGCTCCTGCTCTCGGTGAGCCAATGGATTTGGAGA CGGCATTGCAACTCGTGCTGAGGAAGTCACTTGCTCATGGCGGTCTCACCAAGGGACTTCATGAGGCTGCAAAAGTGATTGAGAAGCATGCTGCTCAGCT TTGCGTATTGGCAGAGGACTGCAACCAGGCAGACTATGTCAAGTTGGTGAAGGCTCTCTGTGCTGATCACAACGTTAGCTTGATGACCGTTCCCAGTGCC AAGACCCTTGGTGAATGGGCTGGTGGTGGTGATGCTGTTTCTTTATGGCCTTCCCTGTTCATCTTGACATCATCTAATGCTGTGCTGCAGCTTTGCAAGA TCGATTCAGAGGGAAAAGCCAGGAAGGTGGTTGGATGCTCCTGTGTTGTTGTGAAGGATTTCGGTGAGGAAAGTGAAGGGCTAAACATTGTTCAAGAGCA TTTGAAATCTCTATAG
AA sequence Show only first row Show all	>Lus10035501 pacid=23147371 polypeptide=Lus10035501 locus=Lus10035501.g ID=Lus10035501.BGIv1.0 annot-version=v1.0 MVSVNIGMLHYVLDHIYGAWPLSMVQPNWRTIWESKTACLKEGVFMTPCDEEIVSALPPESRTARVAFLAPKSGPRERMACVVHLAGTRDHTYECRLRLA APLLKDNIATMVLERRPMMQQGAKLLCVRDLLLLGKATIEEASSLLHWLDAKAGFGKLGICGLSMGKNQIKNHIMPTRISPGSPELGFYEFSFHLGGVHA AMVGSLHPTPVATLPFLSPHSAVVAFCEGILQHGTAWEALRADLAEQVAAMTLEQVRERMRTVHSLTDVTRFPAPKIQRRLFSSLQLLIAKEVFSVTNSQ KAKMSGEEVAVQQPEAPPAAAPAPALGEPMDLETALQLVLRKSLAHGGLTKGLHEAAKVIEKHAAQLCVLAEDCNQADYVKLVKALCADHNVSLMTVPSA KTLGEWAGGGDAVSLWPSLFILTSSNAVLQLCKIDSEGKARKVVGCSCVVVKDFGEESEGLNIVQEHLKSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12150			unknown protein		Lus10035501 [exp]	0	1
AT3G44620			protein tyrosine phosphatases;...		Lus10019533 [exp]	2.2	0.8752
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10004648 [exp]	3.5	0.8702
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10007376 [exp]	4.2	0.8820
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	4.5	0.8873
AT5G27700			Ribosomal protein S21e (.1)		Lus10020645 [exp]	4.6	0.8690
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	4.7	0.8880
AT5G48760			Ribosomal protein L13 family p...		Lus10022793 [exp]	5.7	0.8787
AT4G31985			Ribosomal protein L39 family p...		Lus10019065 [exp]	6.8	0.8280
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10023825 [exp]	7.4	0.8587
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016431 [exp]	9.0	0.8596

Compare expression of checked genes

Lus10035501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.