Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06900 499 / 1e-173 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT2G42250 391 / 2e-131 CYP712A1 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) AT3G20100 363 / 4e-120 CYP705A19 "cytochrome P450, family 705, subfamily A, polypeptide 19", cytochrome P450, family 705, subfamily A, polypeptide 19 (.1) AT4G15350 360 / 5e-119 CYP705A2 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) AT3G20950 357 / 1e-117 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1) AT4G15360 356 / 2e-117 CYP705A3 "cytochrome P450, family 705, subfamily A, polypeptide 3", cytochrome P450, family 705, subfamily A, polypeptide 3 (.1) AT3G20140 356 / 2e-117 CYP705A23 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) AT3G20940 355 / 4e-117 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT5G07990 354 / 1e-116 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G47990 352 / 4e-116 THAD1, THAD, CYP705A5 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027798 [exp] 565 / 0 AT5G06900 349 / 1e-117 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10005878 [exp] 485 / 7e-168 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 470 / 6e-162 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10013150 [exp] 384 / 3e-128 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 366 / 3e-121 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10023827 [exp] 358 / 3e-118 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10019457 [exp] 357 / 6e-118 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017742 [exp] 353 / 3e-116 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 350 / 4e-115 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049800 [exp] 682 / 0 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G058200 [exp] 578 / 0 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037201 [exp] 468 / 3e-161 AT5G06900 382 / 6e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.005G037100 [exp] 468 / 5e-161 AT5G06900 383 / 4e-128 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.013G027000 [exp] 459 / 5e-158 AT5G06900 357 / 3e-118 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G052600 [exp] 438 / 2e-149 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G190800 [exp] 419 / 7e-142 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G057900 [exp] 401 / 3e-135 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.001G167900 [exp] 374 / 2e-124 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 374 / 3e-124 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035502 pacid=23147672 polypeptide=Lus10035502 locus=Lus10035502.g ID=Lus10035502.BGIv1.0 annot-version=v1.0 ATGACGCTACCCGATTCGCAATTCTACTGGCCTGCAACAATCGGCTTACTCTGCATCACACTACTCATCCTCAAAACACTATTCGCCGGAACCCGACCCG ATTCCCCGCCGCCGCGTCCATTCGCGCTTCCGATCATCGGCCATCTCCACCTTCTGGCTCCGATCCCACACCAAGCCCTCCACAAGCTCGCCCTCCGACA CGGCCCGCTCTTTAGAATCTCCCTCGGCTCCGTCCCCTGCGTCGTCGCCTCCTCGCCGGAGACGGCCAAGGCGTTCCTCAAGACCCACGAGTCCTCCTTC TCGGATCGACCGGGATCCGTCGCAGTCGACTACCTCACTTACGGATCCGCCGACTTCTCGTTCGCCCCACACGGGCCGTATTGGAAATTCATGAAGAAGC TCTGCATGTCGGAGCTTCTTGGTGGCCGGACTTTGGATCGGATGGCGAATCTCCGGCGGGAAGAGATCGAATCGTTCTGTTTAGGGATTTTGAAGAGAGC AGGGGAGAGGGTTGAAGTCGGCGGGGAGCTGATTCGAGTGACGAACAATGTGATCTCGAGGATGGCGATGGGAGCGAGATGCTCCGGGGACGGCGGCGGG GAGGCGGAAGAGGTGAGGGATGTGATTCGGGAGACGGCGGAGCTGACTGGGAAATTCAATTTGGCGGATTTTGTGTGGTTCTGTAAAGGATTGGATCTTC AGGGGTTTGGGAAGAGGATGGAGGTTGTGAGGGAGAAATTTGATTCGATGATGGAGAGGATCATTAATGAGCACGAGGAAGAAAGGAAGAAGACGAAGAA GAACAACAATGGTGGTTTTGAGGACGATGATGACCAAGTGAAGGATTTGCTTGATGTGTTGCTGGATATTTCTGAGGATCAGAGTTCAGAAATCAGACTG ACCCGTGAGAATATCAAGGCTTTTATCCTGGACATATTTGCGGCGGGAACCGACACATCGGCGATCACCACAGAATGGGCACTGGCAGAGCTAATCAACC ACCCAGAGATGTTAACCAAAGCACAACACGAGATCGACTTAGTAGTGGGGAAATCGAGGATGGTCAAAGAATCAGACATTCCGAACCTTCCTTACCTCCA AGCCGTGGTGAAAGAGACGTTGAGGCTCCACCCGACGGGGCCATTAATAGTGCGAGAATCTTCTGAGGATTGTGAAGTCCAGGGCTACAACATACCGGCT AGGACCAGGCTGTTCGTGAACGTTTGGGCCATTGGCCGCGACCCGAACCACTGGGACGATCCGCTCGAGTTTAAACCCGAGAGGTTCGTCGACGGGAAGG GGTCGCAGGTCGAAGTGAGGGGGCAACATTTCGAGATGCTTCCATTTGGGAGTGGGAGGAGAGGGTGCCCCGGGACTACATTGGCTCTTCAAATGGTGCA GACTATGTTGGCTGTGATGGTTCAGTGCTTTGAGTGGAAGGTTGATGGAGATGTTGATATGGAGGAAGGAGTTGGGCTTACTCTGCCTAGGGCTAACCCC TTGGTTTGTGTCCCTATAGCTAGGCTACATCCCTTTCCAACCAATGGACTAGATAATTAA
AA sequence Show only first row Show all	>Lus10035502 pacid=23147672 polypeptide=Lus10035502 locus=Lus10035502.g ID=Lus10035502.BGIv1.0 annot-version=v1.0 MTLPDSQFYWPATIGLLCITLLILKTLFAGTRPDSPPPRPFALPIIGHLHLLAPIPHQALHKLALRHGPLFRISLGSVPCVVASSPETAKAFLKTHESSF SDRPGSVAVDYLTYGSADFSFAPHGPYWKFMKKLCMSELLGGRTLDRMANLRREEIESFCLGILKRAGERVEVGGELIRVTNNVISRMAMGARCSGDGGG EAEEVRDVIRETAELTGKFNLADFVWFCKGLDLQGFGKRMEVVREKFDSMMERIINEHEEERKKTKKNNNGGFEDDDDQVKDLLDVLLDISEDQSSEIRL TRENIKAFILDIFAAGTDTSAITTEWALAELINHPEMLTKAQHEIDLVVGKSRMVKESDIPNLPYLQAVVKETLRLHPTGPLIVRESSEDCEVQGYNIPA RTRLFVNVWAIGRDPNHWDDPLEFKPERFVDGKGSQVEVRGQHFEMLPFGSGRRGCPGTTLALQMVQTMLAVMVQCFEWKVDGDVDMEEGVGLTLPRANP LVCVPIARLHPFPTNGLDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	0	1
AT1G75800			Pathogenesis-related thaumatin...		Lus10033136 [exp]	1.7	0.8305
					Lus10007244 [exp]	4.9	0.7967
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028100 [exp]	8.5	0.6635
AT1G34580			Major facilitator superfamily ...		Lus10020934 [exp]	11.2	0.6975
					Lus10029087 [exp]	11.6	0.7835
					Lus10024490 [exp]	16.1	0.7666
AT1G27000			Protein of unknown function (D...		Lus10013269 [exp]	16.4	0.5974
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10028287 [exp]	16.5	0.7740
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016495 [exp]	19.4	0.7512
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10019432 [exp]	22.9	0.7600

Compare expression of checked genes

Lus10035502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.