Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22290 441 / 3e-155 Endoplasmic reticulum vesicle transporter protein (.1) AT1G36050 171 / 2e-49 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 165 / 2e-47 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G50950 72 / 1e-13 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT3G20560 66 / 1e-11 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT4G27080 62 / 3e-10 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027795 [exp] 560 / 0 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 469 / 4e-166 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10021024 [exp] 377 / 1e-129 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036449 [exp] 183 / 2e-53 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036158 [exp] 179 / 8e-52 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10003406 [exp] 114 / 9e-28 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10041121 [exp] 64 / 4e-11 AT1G36050 382 / 8e-133 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10019611 [exp] 62 / 4e-10 AT4G27080 664 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10040029 [exp] 61 / 6e-10 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G022800 [exp] 452 / 4e-159 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.006G023900 [exp] 451 / 7e-159 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.001G206100 [exp] 179 / 3e-52 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.005G168800 [exp] 177 / 8e-52 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 171 / 1e-49 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 168 / 4e-48 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.001G419300 [exp] 62 / 2e-10 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) Potri.011G135500 [exp] 59 / 2e-09 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter
Representative CDS sequence Show only first row Show all	>Lus10035503 pacid=23147572 polypeptide=Lus10035503 locus=Lus10035503.g ID=Lus10035503.BGIv1.0 annot-version=v1.0 ATGGGAGTGAAACAGGCTATAAAGAGCCTGGATGCTTTCCCTCGTGCAGAAGAACACCGGCTGCAGAAAACACGTTCTGGAGCTCTTGTTTCGATTATTG GGCTTGTGATAATGGCTACATTGTTTCTGCATGAGCTCTCTTACTACCTCCAAACGTATAAAGTTCATCAGATGTCCGTAGACTTGACACGTGGGCAAAC GCTCCCGATCGATGTAAACATCACATTTCCTTCCGTACCTTGTGATGTATTAAGCGTGGATGCAATTGACATGTCTGGAAAACATGAAGTGGATCTTGAT ACAAGTATATGGAAACTTCGACTGAACAGTCATGGACAGATCATTGGCACTGAATATTTGACAGACCTCGTGGAAAAGGAACACAGTCACAATCATGATG ATAAAGATCATCAGGATAATCTTGACCAACAACTTCACATGCAAGGCTTTGATGAAGAGGCTGAAAACATGATAAAGAAGATGAAGCAAGCCTTAACAAA TGGAGAAGGATGCCGGATCTATGGTACCTTAGATGTTCAACGTGTTTCTGGAAACTTCCACATTTCAGTTCATGGGTTGAACATTTTCGTTGCACAGATG ATTTTTGGAGGATCTAAGCATGTTAACGTGACTCACATCGTTAATAATCTATCATTTGGGCCGAATTACCCTGGTATTCACAATCCTCTTGATGGGACAG AGAGGATTCTACACGATACAAGTGGAATATTTAAATACTTTATCAAGATTGTTCCAACGGAGTACAGATACATCTCTAAGAAAGTTGTGCCAACTAATCA ATTCTCAGTTACGGAAATTGTGACAGCACCGAACCCAAACCCGTATCTCGACCTGGCTCCGGCCCGTACAACCGGGTCGGGTCCTGATCCGCTCCCAAGG GAACTGAAGAAGACGAAGGCGGCGATATCGTTTGGCATTCTTGCGAGTTCCTCCTCCGCCACCGCCGACGGGGATGTTTCTGAGAGCGCCGCCTTTGGTC CAGTAGCGGCGGCAGTCCTTGCAGAAGAATCGAGGCTGGGAGAGGTTGTAGTTGTTGTAGTAGCAGAATTTCGTGTTGGAGGAGTCGCAGCGAGGACAAT TGAGCTGCTCTTGCTCCGGGAAAGGCGGCGCTGGCTGCTGGTGAATCATCGGGAATTCCGAAGTCGGATCTTGCATTGA
AA sequence Show only first row Show all	>Lus10035503 pacid=23147572 polypeptide=Lus10035503 locus=Lus10035503.g ID=Lus10035503.BGIv1.0 annot-version=v1.0 MGVKQAIKSLDAFPRAEEHRLQKTRSGALVSIIGLVIMATLFLHELSYYLQTYKVHQMSVDLTRGQTLPIDVNITFPSVPCDVLSVDAIDMSGKHEVDLD TSIWKLRLNSHGQIIGTEYLTDLVEKEHSHNHDDKDHQDNLDQQLHMQGFDEEAENMIKKMKQALTNGEGCRIYGTLDVQRVSGNFHISVHGLNIFVAQM IFGGSKHVNVTHIVNNLSFGPNYPGIHNPLDGTERILHDTSGIFKYFIKIVPTEYRYISKKVVPTNQFSVTEIVTAPNPNPYLDLAPARTTGSGPDPLPR ELKKTKAAISFGILASSSSATADGDVSESAAFGPVAAAVLAEESRLGEVVVVVVAEFRVGGVAARTIELLLLRERRRWLLVNHREFRSRILH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10035503 [exp]	0	1
AT5G10110			unknown protein		Lus10022498 [exp]	2.8	0.8426
AT3G56840			FAD-dependent oxidoreductase f...		Lus10033520 [exp]	6.3	0.7955
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	7.1	0.8356
AT3G19630			Radical SAM superfamily protei...		Lus10005409 [exp]	8.4	0.7814
AT1G12650			unknown protein		Lus10017837 [exp]	13.0	0.8173
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	18.7	0.8322
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	18.7	0.8269
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Lus10039405 [exp]	23.5	0.8044
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10027795 [exp]	23.7	0.8212
AT3G10530			Transducin/WD40 repeat-like su...		Lus10037324 [exp]	29.7	0.7944

Compare expression of checked genes

Lus10035503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.