Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51700 103 / 3e-28 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT1G07640 99 / 5e-26 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT3G21270 97 / 1e-25 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT3G50410 97 / 2e-25 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1) AT3G45610 96 / 7e-25 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G66940 95 / 7e-25 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 96 / 9e-25 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT2G46590 97 / 2e-24 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT2G28810 96 / 2e-24 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT5G65590 96 / 3e-24 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027797 [exp] 202 / 4e-67 AT1G51700 125 / 2e-36 DOF zinc finger protein 1 (.1) Lus10015425 [exp] 97 / 4e-25 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10016566 [exp] 97 / 1e-24 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10029767 [exp] 96 / 2e-24 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10028611 [exp] 94 / 2e-24 AT1G21340 135 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10042114 [exp] 91 / 3e-24 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10034652 [exp] 94 / 5e-24 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10017882 [exp] 94 / 5e-24 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10014001 [exp] 94 / 6e-24 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034200 [exp] 114 / 5e-32 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1) Potri.007G036400 [exp] 100 / 1e-26 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1) Potri.005G131600 [exp] 100 / 2e-26 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1) Potri.005G134200 [exp] 98 / 3e-25 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G038100 [exp] 98 / 4e-25 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.015G048300 [exp] 97 / 1e-24 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.012G063800 [exp] 96 / 3e-24 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.003G144500 [exp] 95 / 3e-24 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.014G036600 [exp] 94 / 4e-24 AT1G47655 128 / 2e-36 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 94 / 4e-24 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10035504 pacid=23147528 polypeptide=Lus10035504 locus=Lus10035504.g ID=Lus10035504.BGIv1.0 annot-version=v1.0 ATGCAAGATCCGACTTCGGAATTCCCGATGATTCACCAGCAGCCAGCGCCGCCTTTCCCGGAGCAAGAGCAGCTCAATTGTCCTCGCTGCGACTCCTCCA ACACGAAATTCTGCTACTACAACAACTACAACCTCTCCCAGCCTCGATTCTTCTGCAAGGACTGCCGCCGCTACTGGACCAAAGGCGGCGCTCTCAGAAA CATCCCCGTCGGCGGTGGCGGAGGAGGAACTCGCAAGAATGCCAAACGATCTTCCAATTCCAACCAGAAACGCGCCAACCCGGATCCTACCCCGGATTCC TCTCCCAGTGTCACCCGCCGGCTGGTTTCTGAACCTACATCGCCGCCTTCGTCTTCTTCAGTTCCCTTGGGAGCGGATCAGGACCCGACCCGGTTGTACG GGCCGGAGCCAGGTCGAGATACGGGTTTGGGTTCGGTGCTGTCACAATTTCCGTAA
AA sequence Show only first row Show all	>Lus10035504 pacid=23147528 polypeptide=Lus10035504 locus=Lus10035504.g ID=Lus10035504.BGIv1.0 annot-version=v1.0 MQDPTSEFPMIHQQPAPPFPEQEQLNCPRCDSSNTKFCYYNNYNLSQPRFFCKDCRRYWTKGGALRNIPVGGGGGGTRKNAKRSSNSNQKRANPDPTPDS SPSVTRRLVSEPTSPPSSSSVPLGADQDPTRLYGPEPGRDTGLGSVLSQFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10035504 [exp]	0	1
AT4G25150			HAD superfamily, subfamily III...		Lus10007939 [exp]	1.7	0.8809
AT2G02870			Galactose oxidase/kelch repeat...		Lus10036735 [exp]	7.2	0.8792
					Lus10018014 [exp]	7.9	0.8989
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10004711 [exp]	11.0	0.8854
AT1G30090			Galactose oxidase/kelch repeat...		Lus10042824 [exp]	17.1	0.8749
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016462 [exp]	17.9	0.8498
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	25.9	0.8783
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	26.2	0.8673
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10041953 [exp]	27.4	0.8476
AT5G46080			Protein kinase superfamily pro...		Lus10015326 [exp]	27.9	0.8766

Compare expression of checked genes

Lus10035504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.