Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01460 860 / 0 LMBR1-like membrane protein (.1) AT3G08930 855 / 0 LMBR1-like membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027794 [exp] 942 / 0 AT5G01460 921 / 0.0 LMBR1-like membrane protein (.1) Lus10004814 [exp] 789 / 0 AT5G01460 797 / 0.0 LMBR1-like membrane protein (.1) Lus10002488 [exp] 303 / 1e-99 AT5G01460 286 / 2e-93 LMBR1-like membrane protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116200 [exp] 850 / 0 AT5G01460 848 / 0.0 LMBR1-like membrane protein (.1) Potri.006G100200 [exp] 846 / 0 AT5G01460 825 / 0.0 LMBR1-like membrane protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04791 [flax] [poplar] LMBR1 LMBR1-like membrane protein
Representative CDS sequence Show only first row Show all	>Lus10035505 pacid=23147421 polypeptide=Lus10035505 locus=Lus10035505.g ID=Lus10035505.BGIv1.0 annot-version=v1.0 ATGGGCGATTTCAATCTCGCCCTGGTAATCGTCGCCATAGTGGTGTGCGTCATCGTCTTCCTCTTCAATGTCTACCTCCTGGTCAATTACCAGCACCCGG ACGACAAGAACCAAGCCTACTTCCCGAAATTCGTCGTCGTTTTCGGCCTCTCCGTCGCTGTCATCTCCATACTGATGCTGCCGGCCGACGTGGCGAACCG GCAGGCCTGTCGCCACGCGATATACAACGGCGCCTGCAATCTCACTCTGCCGATGAAGGATCTCTGGATCGCCGTCTACATCGTCGATGCTTTGCTTGTG TTCTTCATCATCCCTTTCGCCATGTTCTACTACGAAGGGGACCAGGACAAGACCATTGGCAAGCGAATTAAGAGCGCACTTTGTTGGGTGATAACTACAG CCATTGTCTGCGCTCTTCTGCTTGGAATCTTATACGGGCTAGTTGGAAAGGTTGATTTCACTGTTAGGCATCTCTCCTCGACCACGACAGACTTTCCAAC TTCTTGGAGTTTCTCTATGAGTCAACCGTGTGTTGGAAATAATGCACGTCAGTGCTCAGCATATCTTGCCAATGCTACTTCAGAGAAGACATGGACTATG CAAACTACGTTCCCTGAATATGTTGTTGCACTTGCTACAATAGCTGGATCTGTGCTTTTCTCGATATTTGGTGGAGTTGGTATTGCAAGTTTACCCCTGG GACTTATTTTCTCATTCCTCCGGCGACCAAAGGCTGTTATCACTCGCTCACAGTACATCAAGGAAGCAACAGAACTCGGTAAAAAAGCCAGAGAATTGAA GAAGGCAGCTGATTCATTGCGTCAGGAAGAGAAAAATGGTGCTAAGGGGAGAAAATGGCGTAAAAATGTAAAGGCAGTCGAAAAGGAATTGCTTCAGTTG GAAGAAGATGTAAACTTACTGGAAGAAATGTATCCTCAAGGAGAAAAGGCTGAGACTACTTGGGCTCTTACTGTACTTGGTTATTTGGCAAAACTTGTGT TGGGATCCTTAGGATTGATTGTTTCAGTGGCTTGGATTGTTCATATTATCATATATCTGTTGATTGATCCTCCTCTTTCTTCTCTACTCAATGAGGTTTT TATCAAGTTGGACGATGTGTGGGGTCTTCTTGGTACTGCAGCATTTGCTTTCTTCTGCTTTTACCTTCTCCTTGCTGTGGTGGCTGGTGCAACGATGCTG GGCCTGAAAATTGTTTTCATCACGATTCATCCCATGAAGTGGGGTGCAACTCTCATGAACTCTTTCCTTTTCAATGTGGGACTCATTCTCCTGTGTTCGA TTAGTGTGATCCAGTTTTGTGCCACGGCATTTGGCTATTATGCACAAGCAACAGCTGCTCAAGAAATTTTTGGTCACACATTGCAGTCTCTTCGCGGGAT TAAATATCTGTACAAGTACAATGTGTTCCAAATTGCTTTCATCGTTCTTGCGGGGTTGACTTTCGTATATTACGCTGCCTTCGGATGGAAACGGAAGAAA CCATCCGGCCGGTTCCAACTCTCGACCTAG
AA sequence Show only first row Show all	>Lus10035505 pacid=23147421 polypeptide=Lus10035505 locus=Lus10035505.g ID=Lus10035505.BGIv1.0 annot-version=v1.0 MGDFNLALVIVAIVVCVIVFLFNVYLLVNYQHPDDKNQAYFPKFVVVFGLSVAVISILMLPADVANRQACRHAIYNGACNLTLPMKDLWIAVYIVDALLV FFIIPFAMFYYEGDQDKTIGKRIKSALCWVITTAIVCALLLGILYGLVGKVDFTVRHLSSTTTDFPTSWSFSMSQPCVGNNARQCSAYLANATSEKTWTM QTTFPEYVVALATIAGSVLFSIFGGVGIASLPLGLIFSFLRRPKAVITRSQYIKEATELGKKARELKKAADSLRQEEKNGAKGRKWRKNVKAVEKELLQL EEDVNLLEEMYPQGEKAETTWALTVLGYLAKLVLGSLGLIVSVAWIVHIIIYLLIDPPLSSLLNEVFIKLDDVWGLLGTAAFAFFCFYLLLAVVAGATML GLKIVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIVLAGLTFVYYAAFGWKRKK PSGRFQLST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	0	1
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	1.0	0.8574
AT5G09890			Protein kinase family protein ...		Lus10042650 [exp]	1.4	0.8522
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	3.5	0.8405
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10021796 [exp]	5.0	0.8358
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001437 [exp]	5.2	0.7760
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10025825 [exp]	6.7	0.7937
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10009263 [exp]	7.5	0.7950
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	7.9	0.8129
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	8.5	0.8329
AT1G51540			Galactose oxidase/kelch repeat...		Lus10033376 [exp]	8.9	0.7887

Compare expression of checked genes

Lus10035505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.