Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11210 244 / 7e-79 SGNH hydrolase-type esterase superfamily protein (.1) AT2G38180 229 / 2e-72 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45920 144 / 1e-40 SGNH hydrolase-type esterase superfamily protein (.1) AT5G62930 144 / 1e-40 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004815 [exp] 275 / 6e-91 AT3G11210 323 / 3e-112 SGNH hydrolase-type esterase superfamily protein (.1) Lus10040197 [exp] 240 / 4e-77 AT3G11210 402 / 5e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10028290 [exp] 234 / 5e-75 AT3G11210 402 / 2e-143 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027790 [exp] 225 / 3e-70 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027793 [exp] 138 / 6e-40 AT3G11210 78 / 1e-18 SGNH hydrolase-type esterase superfamily protein (.1) Lus10027675 [exp] 140 / 3e-39 AT5G62930 414 / 2e-148 SGNH hydrolase-type esterase superfamily protein (.1) Lus10000525 [exp] 132 / 3e-36 AT5G45920 337 / 4e-118 SGNH hydrolase-type esterase superfamily protein (.1) Lus10013941 [exp] 79 / 4e-17 AT5G45920 257 / 1e-87 SGNH hydrolase-type esterase superfamily protein (.1) Lus10039938 [exp] 57 / 4e-10 AT5G62930 180 / 1e-58 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100300 [exp] 274 / 9e-91 AT3G11210 327 / 8e-114 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116100 [exp] 268 / 3e-88 AT3G11210 337 / 9e-118 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G068000 [exp] 255 / 3e-83 AT3G11210 419 / 5e-150 SGNH hydrolase-type esterase superfamily protein (.1) Potri.010G189300 [exp] 251 / 1e-81 AT3G11210 414 / 4e-148 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115800 [exp] 241 / 9e-78 AT3G11210 307 / 4e-106 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G116000 [exp] 236 / 3e-76 AT3G11210 306 / 1e-105 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G081900 [exp] 145 / 5e-41 AT5G62930 403 / 3e-144 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G053800 [exp] 132 / 3e-36 AT5G45920 329 / 3e-115 SGNH hydrolase-type esterase superfamily protein (.1) Potri.011G063800 [exp] 132 / 4e-36 AT5G45920 357 / 6e-126 SGNH hydrolase-type esterase superfamily protein (.1) Potri.016G115900 [exp] 56 / 1e-09 AT3G11210 58 / 2e-11 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10035506 pacid=23147373 polypeptide=Lus10035506 locus=Lus10035506.g ID=Lus10035506.BGIv1.0 annot-version=v1.0 ATGGTGGGTCCGATGAGACCCGTCTTCGTGTTGTTCGGATCCTCCATTGTTCAGTTCAGCTATGGGGTTTCCGGCTGGGGAGCTATCCTTTCTGATTATT ACTCTCGCAAGGCGGACGTTGTGGTTAGAGGATATGGAGGTTGGAATTCCAGGAATGCTCTTCAGGTTCTTCATCAAATTTTCCCAAAGGATGCAGCTAC ACAGCCTGCATTGGTCATAGTCTATTTTGGAGGAAACGATGCATGCCATCCGGACTTCAATGCAGCTCATGTACCTCTAGCTGAGTACTATGAGAACATG AAGAACATTGCTGCTCATCTCAAGGTGGGCCTATCAGGAACAACCCGGGTCATCTTTCTTACTCCGCCTCCTGTCAACGAGAAGCTCATCGCAAAATCTT TTAGCCGAGTTAACGGCCGAACGAATGCTGCTATCCGGATGTACGCAGATGCTTGTTTGAAAGTGTCTGTAGAAATGGAGATCACAGCTATTGATCTTTG GGATGTATTCCAACAACGGGACGATTGGCTGTCCACTTGCTTCACTAAGGCCACATATTGTACTGTTTGGATCTCCATAGTCCAGTTGAGCTTCGGAAAT GGCGGATGGGGAGCTATTCTCTCTGATATCTACACTCGCAAGGCGGATGTGGTGTTGAGAGGATATTCAGGGAGGAATTGGAGGAGAGCTCTGCAAGTTC TCCACCGAATCTTCCCCAAGGATGGTCGTCAGCAGCCGTCACTGGTGATCGTCTACTTCGGCAGTAACGATTCCGTCAAGCCTCACAGAACAGGGCTCGG CCTTCACGTTCCGATTCGGGAGTACGTTGACAATATGAGGAGAATCGCTCTCCATCTCCAGGGACTTGTGGGAATGGAACGGACGAACGAGTCGTACAGG ATATACTCCAAAGCGTGCATGAAGCTCTGCGAGGAGACCGGCATCAAAGGAGTTGATCTATGGACTTCAATTCAGCAACACAAAGACAACAATGATCAGA GCTGCTTCACAGACGGGATCCATCTATCTGCAGAAGGGAGCAAGGTGGTGGTGAAGCAGATCCTGAAGGCAATCACGGAAGCAGATTGGGAACCCAGTCT GGATTCCCGATCGCTTCCGACTGAGTTCTCGGAAGATTCTCCCTACGATCCAACTGGTCACGATGGCAGAACCATCAACGTCTCTCATCTCGACTTCAAC AAAGCTGCCCTGTGGGAGTAG
AA sequence Show only first row Show all	>Lus10035506 pacid=23147373 polypeptide=Lus10035506 locus=Lus10035506.g ID=Lus10035506.BGIv1.0 annot-version=v1.0 MVGPMRPVFVLFGSSIVQFSYGVSGWGAILSDYYSRKADVVVRGYGGWNSRNALQVLHQIFPKDAATQPALVIVYFGGNDACHPDFNAAHVPLAEYYENM KNIAAHLKVGLSGTTRVIFLTPPPVNEKLIAKSFSRVNGRTNAAIRMYADACLKVSVEMEITAIDLWDVFQQRDDWLSTCFTKATYCTVWISIVQLSFGN GGWGAILSDIYTRKADVVLRGYSGRNWRRALQVLHRIFPKDGRQQPSLVIVYFGSNDSVKPHRTGLGLHVPIREYVDNMRRIALHLQGLVGMERTNESYR IYSKACMKLCEETGIKGVDLWTSIQQHKDNNDQSCFTDGIHLSAEGSKVVVKQILKAITEADWEPSLDSRSLPTEFSEDSPYDPTGHDGRTINVSHLDFN KAALWE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11210			SGNH hydrolase-type esterase s...		Lus10035506 [exp]	0	1
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	14.7	0.9176
AT5G08560			transducin family protein / WD...		Lus10001045 [exp]	18.2	0.9134
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	21.8	0.9161
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	32.9	0.9104
AT2G23755			unknown protein		Lus10019660 [exp]	36.2	0.9012
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	42.6	0.8962
					Lus10000160 [exp]	54.3	0.8626
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	55.5	0.8950
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10026287 [exp]	60.4	0.8815
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10005825 [exp]	63.7	0.8895

Compare expression of checked genes

Lus10035506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.