Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51860 527 / 0 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1) AT2G38170 510 / 1e-179 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT5G01490 414 / 8e-142 ATCAX4, CAX4 cation exchanger 4 (.1) AT1G55730 306 / 6e-100 ATCAX5 cation exchanger 5 (.1.2) AT3G13320 296 / 3e-96 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55720 286 / 7e-92 ATCAX6 cation exchanger 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027791 [exp] 764 / 0 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 632 / 0 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10002490 [exp] 622 / 0 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10040674 [exp] 444 / 1e-153 AT2G38170 511 / 2e-180 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10033396 [exp] 286 / 4e-91 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10034853 [exp] 287 / 2e-90 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10027136 [exp] 278 / 1e-88 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10018231 [exp] 271 / 7e-87 AT3G51860 365 / 1e-123 cation exchanger 3 (.1) Lus10006068 [exp] 260 / 2e-78 AT3G13320 516 / 1e-176 cation exchanger 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099900 [exp] 571 / 0 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.016G115500 [exp] 566 / 0 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.009G045800 [exp] 501 / 3e-176 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G251200 [exp] 497 / 1e-174 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.011G166900 [exp] 295 / 2e-95 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.001G469800 [exp] 295 / 2e-95 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.010G249200 [exp] 281 / 3e-90 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10035507 pacid=23147561 polypeptide=Lus10035507 locus=Lus10035507.g ID=Lus10035507.BGIv1.0 annot-version=v1.0 ATGGCGGCTCCTCCGAACAATGAAACGGCGCCGTGGATGCTGGAGAACGGCGGATACAAGGTGCTGACGAAGGAAGCGAGGCACGGACATGGACACAGTC ACCACGGCCGTACGGCTCACAACATGTCGTCGTCGTCTCTGAGGAAGAAGTCCGATTTAACCCTGGTCAACAGGGTCCAATACAGTTTGCTCCGAGCATT TTTGGCGAACCTCCAGGAGGTTATTTTGGGGACGAAGCTCTCCGTTCTCTTCCCGGCCATCCCTCTGGCCATCATCGCCGACCAATGCAACTTCGGAAGG CCGTGGGTGTTTGGGTTGAGCTTGCTGGCTCTAACGACGTTAGCCGAACGTGTCAGCTTTTTGACAGAGCAAATCGCTTACTTTACCGGTCCAACAGTGG GAGGGCTGCTGAACGCAACATGCGGGAACGCAACGGAGCTGATCATAGCAATATTCGCGCTATGCCAGAACAAGATCGAAGTGGTCAAGTACTCCTTGCT CGGTTCGATCCTCTCGAACCTCCTCCTTGTGTTGGGGACTTCATTATTCTGCGGCGGGCTAGGTAGCCTCGGTAAGCAGCAGAAGTACGACAGGAGGCAG GCCGACGTGAACATGCTGCTACTGTTCCTGGGACTGTTGTGTCACATGCTGCCGCTGTTGTTCCGAGTTGCGGGGAACGATGACACTTCCACCACCACTG TCCCCACGCTCGAGCTTTCGAGGGCTAGCAGCATCGTGATGCTCGTGGGTTACGTCGTTTACATCGTGTTCCAGCTCTGGACCCATCGCCAACTCTTCGA AGCTGAAGAGGAAAGTGAAGGCGACCAGGAAGAAGAGACGCCGGTGATCGGGTTCTGGAGCGGGTTTGCATGGCTGGTCGGAATGACAGTCGTGATCGCG CTTCTATCAGAATACGTAGTGGCCACCATCGAAGATGCTTCGACTTCTTGGGGTTTATCAGTAAGCTTTATCAGCATCATTCTGCTTCCGATTGTAGGGA ATGCTGCTGAACATGCTGGTGCCATCATCTTCGCTTTCAAAGACAAGTTGGACATATCTCTTGGAGTTGCTCTAGGTTCGTCGTGTCAAGTCTCGCTGTT TGTGGTTCCGCTGTGCGTGATAGTTGCGTGGATAGCTGGGATTGACATGGACCTCAATTTCAACACCGTCGAAACTGGCAGCCTTGCTATTGCAATCATC GTCACCGCTTTCACTCTACAGGATGGAACATCCAACTACTTGAAAGGGTTGATCTTGCTTCTGTGCTACATTGTCATCGCAGCATGCTTCTTCGTCACCA CCACACCTCTACGTAAGGATAGCTCGATTACCATAGAGAATTATGTCATGATGAACCATTGA
AA sequence Show only first row Show all	>Lus10035507 pacid=23147561 polypeptide=Lus10035507 locus=Lus10035507.g ID=Lus10035507.BGIv1.0 annot-version=v1.0 MAAPPNNETAPWMLENGGYKVLTKEARHGHGHSHHGRTAHNMSSSSLRKKSDLTLVNRVQYSLLRAFLANLQEVILGTKLSVLFPAIPLAIIADQCNFGR PWVFGLSLLALTTLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAIFALCQNKIEVVKYSLLGSILSNLLLVLGTSLFCGGLGSLGKQQKYDRRQ ADVNMLLLFLGLLCHMLPLLFRVAGNDDTSTTTVPTLELSRASSIVMLVGYVVYIVFQLWTHRQLFEAEEESEGDQEEETPVIGFWSGFAWLVGMTVVIA LLSEYVVATIEDASTSWGLSVSFISIILLPIVGNAAEHAGAIIFAFKDKLDISLGVALGSSCQVSLFVVPLCVIVAWIAGIDMDLNFNTVETGSLAIAII VTAFTLQDGTSNYLKGLILLLCYIVIAACFFVTTTPLRKDSSITIENYVMMNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10035507 [exp]	0	1
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	14.7	0.7061
AT3G07570			Cytochrome b561/ferric reducta...		Lus10001180 [exp]	19.6	0.7027
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10000544 [exp]	21.1	0.6904
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10028755 [exp]	47.1	0.6318
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	57.8	0.6309
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10012703 [exp]	63.5	0.5720
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	83.9	0.6099
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10018898 [exp]	85.5	0.6121
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10012801 [exp]	139.9	0.5373
AT2G29525		AtIPCS3	Arabidopsis Inositol phosphory...		Lus10040720 [exp]	143.7	0.5667

Compare expression of checked genes

Lus10035507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.