Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022686 [exp] 284 / 3e-94 ND / Lus10027790 [exp] 229 / 2e-72 AT2G38180 194 / 1e-59 SGNH hydrolase-type esterase superfamily protein (.1) Lus10011573 [exp] 107 / 2e-25 ND / Lus10020538 [exp] 79 / 8e-16 AT2G04810 46 / 5e-05 Protein of unknown function (DUF295) (.1) Lus10005052 [exp] 42 / 0.0004 AT4G27290 87 / 3e-19 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [flax] [poplar] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Lus10035508 pacid=23147651 polypeptide=Lus10035508 locus=Lus10035508.g ID=Lus10035508.BGIv1.0 annot-version=v1.0 ATGTACGGGTTCTTGCCCTTCTCCGTGATGGGGATTTCCCACTGCAACTGTTCACATTTCGGTCGATATTCTGGTTGTTGCGGCTGCGACAAAAAAGAGG AGAAACACTTCGTGGCAGGTTTAGACGGATGGCTACTCATCGCGGACCCATCTACAACTACCGCTAGCGGTCCCCAATGTCTCCAACTCCAACTCTTCAA CCCAATCACGAGCGCCACCATCGCCCTCCCTGATCGCCCTCCCATGCTAGCCAAGCTACTTTCCTCGAGGGACGACATCATCCAAGCCGTTCTCTCCTCT TCTCCTGACAACATCCACGTAGATTGCAACGTCATAGTCCTCTTGGAATCGAGCCCCTACCTAGAATGGTGCAAGGTGTTAGGAGAAGGACGAGGTTGGA AGTTCTTGATCAGCAACGAAATATTCGGAACCCGGCCAGAGGAGGTGTCCTACTACGGAGAGACATTCTACGCTCGAGACTCTAAGAACGTGTACGTCAT TCGCGACCTCATCGTCACATCCTCTCACAGGAACTTTAGTGTCAGGGCAGTCTCCCTGTCCTCACTACAAGTTACAAAATATCCTATCAATAGGACACAT AATCGCTTGGCGCCAGATCTCGCTGGTCAACTCCTAATCATTTACGACTCCGGAAAATCAGTTTATAAGCTGGTTGTTAGTAGTAGCAGTAGTGACTACA AGTGGGAAAAAGTGAAGAGTTTGGATGGTTATGCTGTGTTCTTCGGAACCCATCAATCCTTTTGCCTCCCGGCATCAGATGATTCCAATAATAGAGTCAT AGCCAATCGAATATACTATCCACGCGAGGTGGTTAATCGTGATTTTGGTTGTTCTGCTTCATCTGTTGATCCTTATAAGGGTCTAATCAAGAGGAGCTCT TTTTGGTTTCTACCCATGAATAGGGATGTCATCGGGGAGCATATGGAATCGGAGAAAGGTGTTAGTATGAGAAATTGTGGTCAGGCCGATGTTTTTAGTT ATTGGACTTGGAAAGATGGTAAAGTTTGTGACGGCAACAGATTTCAAGCTCTTTTATCAATTCAAGATGATGAGGGAACAGTGATGACAAATGGGGTGAT ATGA
AA sequence Show only first row Show all	>Lus10035508 pacid=23147651 polypeptide=Lus10035508 locus=Lus10035508.g ID=Lus10035508.BGIv1.0 annot-version=v1.0 MYGFLPFSVMGISHCNCSHFGRYSGCCGCDKKEEKHFVAGLDGWLLIADPSTTTASGPQCLQLQLFNPITSATIALPDRPPMLAKLLSSRDDIIQAVLSS SPDNIHVDCNVIVLLESSPYLEWCKVLGEGRGWKFLISNEIFGTRPEEVSYYGETFYARDSKNVYVIRDLIVTSSHRNFSVRAVSLSSLQVTKYPINRTH NRLAPDLAGQLLIIYDSGKSVYKLVVSSSSSDYKWEKVKSLDGYAVFFGTHQSFCLPASDDSNNRVIANRIYYPREVVNRDFGCSASSVDPYKGLIKRSS FWFLPMNRDVIGEHMESEKGVSMRNCGQADVFSYWTWKDGKVCDGNRFQALLSIQDDEGTVMTNGVI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035508 [exp]	0	1
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	1.7	1.0000
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	2.4	1.0000
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	3.0	1.0000
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10006147 [exp]	4.9	0.9974
					Lus10012269 [exp]	5.0	1.0000
					Lus10000882 [exp]	5.2	0.9894
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	5.3	1.0000
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	5.5	1.0000
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	5.7	0.8603
					Lus10028027 [exp]	5.7	0.9410

Compare expression of checked genes

Lus10035508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.