Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51870 476 / 6e-168 Mitochondrial substrate carrier family protein (.1) AT5G01500 472 / 5e-166 TAAC thylakoid ATP/ADP carrier (.1) AT4G01100 140 / 1e-37 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G37890 134 / 1e-35 Mitochondrial substrate carrier family protein (.1) AT3G53940 131 / 2e-34 Mitochondrial substrate carrier family protein (.1) AT4G26180 130 / 3e-34 Mitochondrial substrate carrier family protein (.1) AT4G32400 130 / 9e-34 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G55640 124 / 3e-32 Mitochondrial substrate carrier family protein (.1) AT1G14560 120 / 1e-30 Mitochondrial substrate carrier family protein (.1) AT5G61810 107 / 9e-26 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027789 [exp] 575 / 0 AT3G51870 462 / 8e-164 Mitochondrial substrate carrier family protein (.1) Lus10004820 [exp] 490 / 2e-173 AT3G51870 462 / 5e-163 Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 140 / 6e-38 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032690 [exp] 139 / 1e-37 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10033947 [exp] 139 / 2e-37 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10008572 [exp] 139 / 3e-37 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 139 / 3e-37 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10004689 [exp] 138 / 4e-37 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 137 / 1e-36 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099800 [exp] 517 / 0 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.016G115400 [exp] 507 / 4e-180 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.014G095400 [exp] 144 / 4e-39 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 142 / 1e-38 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 142 / 2e-38 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.008G060900 [exp] 141 / 3e-38 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 140 / 5e-38 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.016G103300 [exp] 140 / 5e-38 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 139 / 1e-37 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.010G197400 [exp] 135 / 5e-36 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10035509 pacid=23147683 polypeptide=Lus10035509 locus=Lus10035509.g ID=Lus10035509.BGIv1.0 annot-version=v1.0 ATGAGAGAAGAACGAGCCGTTTTGTCGTTCCGAAGCCTGCCAGAACTGAAGACCACACAGTACAGTATTCCGACTGATGACGAAGACAGCGAGCCTCTAT GGAAGACCGCCCGGCTCAGCTGCAGCAGTAAGGAGAACTCCGGCGGCGTCTTCTTTGCGTCCCTGTCAATGGTGGAGAAGGCTGAGAGATTGGAATTCGC GCCTACCACATCTCAGCTACTGAAGAATCCGCTGGCTATGCTGGCTTGCGTTCCTCGAGGCGCCGCGATTTTCATTGCTGGAGCTGCCGCCGGTGCCGCT GCGAAGACCGTGACGGCTCCTCTTGATCGCGTCAAGATTCTTATGCAGACTCACGGTATCAGAGTTGGGCAAGAGAGCACTAAGAAGGCGATTGGTTTAA TTGAGGCTCTAGCATTGATTGGTAAAGAAGAAGGAATCAAAGGTTATTGGAAAGGGAACCTTCCTCAGGTTATTAGGATTATACCTTATAGCGCAGTCCA GCTCTTCAGCTACGAGTTTTACAAGGTATTCTTGCCAGCATTTGCTTGTGAAATTAGGATAGCTTGTTATGTTCTTGGAGCAACTTCATTCTATGTGATT GAAATTTGGCATTTCGATTTCTCGCAGAAACTTTTTAAGGGAAAAGATGGGGAGCTGGCTGTTATTGGAAGACTTGCAGCAGGCGCTTGTGCAGGCATGA CATCCACTCTCGTTACATACCCTTTGGATGTACTAAGGTTGCGGTTAGCAGTTGATACAGGACACAGGACCATGATACAGATTGCTTTAACTATGCTGCG AGAGGAAGGAGCAGCATCGTTTTACTACGGTCTCGGGCCTTCTCTTGTGAGCATCGCTCCATATATTGCTGTGAACTTCTGCATGTTCGACTTAGTGAAG AAATCCTTGCCCGAGAAGTATAAACAGACAGCTCAGTCATCTGTAATTACAGCAGTGGTTTCTGCTGCTGTTGCTACTATCACATGCTATCCACTGGATA CAGTGAGACGACAGATGCAAATGCGGGGTGCGCCTTATAAATCGTTCTTCCATGCCTTTCCAGGGATCGTGGAACGAGATGGGTTCATCGGCTTGTACAG AGGGTTTCTGCCCAACGTATTGAAGAACTTACCCAATAGCAGCATAAGGCTTTCGACATTCGACATAGTGAAACGACTGATAGCAGCGGGCGAGAAAGAG CTGCAACAAATGGTGGATGGGAACCGTGCACAACATAGCTAG
AA sequence Show only first row Show all	>Lus10035509 pacid=23147683 polypeptide=Lus10035509 locus=Lus10035509.g ID=Lus10035509.BGIv1.0 annot-version=v1.0 MREERAVLSFRSLPELKTTQYSIPTDDEDSEPLWKTARLSCSSKENSGGVFFASLSMVEKAERLEFAPTTSQLLKNPLAMLACVPRGAAIFIAGAAAGAA AKTVTAPLDRVKILMQTHGIRVGQESTKKAIGLIEALALIGKEEGIKGYWKGNLPQVIRIIPYSAVQLFSYEFYKVFLPAFACEIRIACYVLGATSFYVI EIWHFDFSQKLFKGKDGELAVIGRLAAGACAGMTSTLVTYPLDVLRLRLAVDTGHRTMIQIALTMLREEGAASFYYGLGPSLVSIAPYIAVNFCMFDLVK KSLPEKYKQTAQSSVITAVVSAAVATITCYPLDTVRRQMQMRGAPYKSFFHAFPGIVERDGFIGLYRGFLPNVLKNLPNSSIRLSTFDIVKRLIAAGEKE LQQMVDGNRAQHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51870			Mitochondrial substrate carrie...		Lus10035509 [exp]	0	1
AT3G51870			Mitochondrial substrate carrie...		Lus10027789 [exp]	1.0	0.9641
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	2.4	0.9622
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10029124 [exp]	3.0	0.9450
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	3.5	0.9443
AT1G57750		MAH1, CYP96A15	MID-CHAIN ALKANE HYDROXYLASE 1...		Lus10002523 [exp]	7.3	0.9207
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10010174 [exp]	8.1	0.9378
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10001399 [exp]	9.2	0.8771
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	9.5	0.9275
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	9.7	0.9396
AT1G30680			toprim domain-containing prote...		Lus10023380 [exp]	11.8	0.9313

Compare expression of checked genes

Lus10035509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.