Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01510 478 / 3e-165 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT3G45890 102 / 7e-23 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT2G31190 94 / 1e-20 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT5G49820 91 / 3e-19 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT1G13770 88 / 2e-18 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT2G23470 70 / 2e-12 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027788 [exp] 895 / 0 AT5G01510 511 / 3e-178 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 105 / 9e-24 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001047 [exp] 104 / 2e-23 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10036909 [exp] 99 / 9e-22 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10038136 [exp] 97 / 5e-21 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 95 / 2e-20 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10003558 [exp] 85 / 3e-17 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 74 / 6e-14 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10037076 [exp] 71 / 6e-13 AT1G13770 583 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099700 [exp] 565 / 0 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Potri.001G193300 [exp] 95 / 2e-20 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.008G095700 [exp] 93 / 4e-20 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.005G224000 [exp] 84 / 4e-17 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.004G229500 [exp] 81 / 4e-16 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.007G035300 [exp] 71 / 6e-13 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.002G038600 [exp] 54 / 5e-08 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10035510 pacid=23147640 polypeptide=Lus10035510 locus=Lus10035510.g ID=Lus10035510.BGIv1.0 annot-version=v1.0 ATGACTCATTCCCTGAGGCTCTCGTTTCCTAACTATGCATTCGAATCGTCGACGACGACGAGCAGCAGCCGGAGTAGGAGAGCTCGTCGTTTCCGATTTA CCTGTGCACAGTCCAATCCTCAAGATTCCGAAGACGAGAGCGATAGATGCCGGAAGAAACAGTCTATTTTAGTGGAGAGGTACAGCAATGGAGCTGTCAA AAGATACATTTTGGATGATGCATTAGGAGTAAGAAGCTCTTTCGAGGAAGATTTGGTCTTCGACTCAATCTCCCCCTCTCCTTCGACTCAATCTCGAAAG CTACGGCAGCAACTGGAAGTCCCCACGTCGTGGGATGAGACGAAAGAAACGGCATGGCCTGTTCCTCGGTTCGTCACGGATTTTGTTCTGCCTGCTGGAT TTCCAGGATCTGTTTCAGACGACTATTTGCACTACATGTTGTTACAGTTCCCCACGAATGTCACTGGATGGATCTGTCACGCGTTGGTCACATCTAGTCT TCTTAAGGCATTTCTGCTTGTGCTTATTACCCTCAGCTACTACTATGCATGGCGGCTGCAGGCTGTTGGTGTTGGCTACTCTACAGGGACGGCTGCAGCT GCTACAGCTGCTGCAATCAGATGGGTGTCTAAGGATGGAATTGGAGCTTTGGGTGGAAGATTTGGCAATCTTTTTGATGATGATCCGAAACAATGGCGCA TGTACGCAGATTTCATTGGTAGTGCTGGGAGCATCTTTGACCTTACCACTCAACTGTACCCAGGCTACTTCCTGCCATTAGCCTCTCTTGGAAATCTGAC TAAGGCTGTTGCAAGGGGACTCAAAGATCCTTCGTCCCGTGTGATCCAAAACCATTTTGCTGCTGCCGGGAATCTAGGGGAAGTAGCCGCAAAGGAAGAA GTTTGGGAAGTAGGAGCTCAATTGCTTGGACTTGCTTTAGGCATACTGATCCTGGATACACCAGGGCTGGTGAAATCTTTTCCTGCCTTGACATTGACGT GGACCAGCACTCGTCTTCTACATCTGTGGTTACGTTATGAATCCTTGTCAGTCCTACAATTCAACACGATAAACCTCAAGCGAGCTCGGCTGCTGGTCAA TTCACATATTATCCATTCTCGTGTTCAAGGAGGCCTGGATTGTAATAAAGAAGAGAACATCTTGTTATGGGAAAGATTCACCAAGCCCAGAATCACTTTT GGTGTCCCCTTGGGAGAGATGATTGGTGGCAAGAAATCCGTTTCCGATGTAAAAGCACTTATGAAAGTGTATGAAGAGGAGAAATATCTGCTCATGGTGA ACAAGGAAACCAGGTATTTCGAGGTCTTTATTTCGTTCAAGGTGGGAGCTACGAGCATCTCGGTATTACGAAGCGTGTGGCAAGCATACTGGCTGCACCT CAACTGGCAACATTCTCTTGATGTTTTCCGCCAGCTTGCTACATCCCAGAACGAGATGCAGGGAAACTTTGAGGATTTCATTCAGCAGTTGGCTCAAGCC GGATGGGACACGAATCAAATCAACCTAAAAGTCCCTGTCGGATTATTGATCGATGAATCATGCTTCAGAGCTTCGAAAGAGTGA
AA sequence Show only first row Show all	>Lus10035510 pacid=23147640 polypeptide=Lus10035510 locus=Lus10035510.g ID=Lus10035510.BGIv1.0 annot-version=v1.0 MTHSLRLSFPNYAFESSTTTSSSRSRRARRFRFTCAQSNPQDSEDESDRCRKKQSILVERYSNGAVKRYILDDALGVRSSFEEDLVFDSISPSPSTQSRK LRQQLEVPTSWDETKETAWPVPRFVTDFVLPAGFPGSVSDDYLHYMLLQFPTNVTGWICHALVTSSLLKAFLLVLITLSYYYAWRLQAVGVGYSTGTAAA ATAAAIRWVSKDGIGALGGRFGNLFDDDPKQWRMYADFIGSAGSIFDLTTQLYPGYFLPLASLGNLTKAVARGLKDPSSRVIQNHFAAAGNLGEVAAKEE VWEVGAQLLGLALGILILDTPGLVKSFPALTLTWTSTRLLHLWLRYESLSVLQFNTINLKRARLLVNSHIIHSRVQGGLDCNKEENILLWERFTKPRITF GVPLGEMIGGKKSVSDVKALMKVYEEEKYLLMVNKETRYFEVFISFKVGATSISVLRSVWQAYWLHLNWQHSLDVFRQLATSQNEMQGNFEDFIQQLAQA GWDTNQINLKVPVGLLIDESCFRASKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10035510 [exp]	0	1
AT3G63510			FMN-linked oxidoreductases sup...		Lus10039605 [exp]	4.8	0.8380
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	8.7	0.7975
AT1G04900			Protein of unknown function (D...		Lus10007135 [exp]	8.9	0.7535
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10034464 [exp]	16.2	0.7425
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	19.1	0.7841
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	29.1	0.7304
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	29.3	0.7854
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	32.0	0.7106
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	34.8	0.7430
					Lus10006129 [exp]	36.3	0.7720

Compare expression of checked genes

Lus10035510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.