Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51880 111 / 1e-30 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G20696 92 / 2e-23 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G20693 91 / 5e-23 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT2G17560 78 / 2e-18 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT4G35570 71 / 1e-15 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT2G34450 71 / 3e-15 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT3G28730 54 / 2e-08 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) AT5G23420 53 / 3e-08 HMGB6 high-mobility group box 6 (.1.2) AT4G23800 47 / 6e-06 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT4G11080 44 / 3e-05 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027787 [exp] 181 / 8e-58 AT3G51880 132 / 2e-39 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10040192 [exp] 104 / 1e-27 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10028298 [exp] 102 / 5e-27 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10030738 [exp] 82 / 2e-19 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012252 [exp] 80 / 5e-19 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 80 / 1e-18 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 82 / 5e-18 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10025391 [exp] 69 / 2e-14 AT2G34450 137 / 8e-42 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Lus10016695 [exp] 68 / 6e-14 AT1G20693 121 / 2e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G067400 [exp] 114 / 8e-32 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.010G189900 [exp] 111 / 1e-30 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.002G009000 [exp] 91 / 6e-23 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.005G101400 [exp] 89 / 2e-22 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.005G252600 [exp] 87 / 2e-21 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.004G131400 [exp] 67 / 1e-13 AT2G34450 132 / 6e-40 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Potri.007G000900 [exp] 61 / 3e-11 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2) Potri.001G093700 [exp] 48 / 2e-06 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.003G138000 [exp] 47 / 4e-06 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.004G124000 [exp] 42 / 0.0002 AT3G28730 875 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10035511 pacid=23147530 polypeptide=Lus10035511 locus=Lus10035511.g ID=Lus10035511.BGIv1.0 annot-version=v1.0 ATGAAGGGTAAGGGTAAGGGGACTGCCAAAGTTACGAAGGAAGCTCTGAAACCTGCTGATGACAGAGCGCTGGATTCGAGTTGTTTGGCTTGGCTTGCTA GTTTCACAATTAGTTCAGTTGATGGAGAATCCCGAATCAGATTGTTACAAGCTGCGTCTGTTTTCAGAAAAGTTGGCAAGCGGAAAGCTGCGCCGGCAGC TGCGGTAGAGAAAGGTAACAAACCGAGAGCAAGGAACGTGAAGAAGGCGAAGAAAGATCCAAACAAGCCAAAGAGGCCTCCAACTGCTTTCTTCGTCTTC CTGGAGGAGTTCAGGAAGACGTTCAAGAAGGAAAATCCAAATGCGAATTCTGTTTCCGCGGTTGGGAAGGCTGGAGGACAGAAGTGGAGGGAAATGTCTG CTGCTGAGAAGGCTCCGTACGAAGCCAAAGCTGGGAAAAAGAAGGACGAGTATGGGGAACTCATGAATGCTTACAACAACAAGCAGGAGAGCGATGATGG TCATGGAGACAAAGAAGATTCAGACAGGTCGAAGTCCGAGGTAAATAATGATGATGACGAGGATGTTAATGATGCTCCTGTTGCCGAGGAAGCGCATCAG GAGAAGGAAGAAGTGGAAGAAGAAGAAGAAGAAGAAGACGATGAAGAGGAAGAAGAGGATGATGATGATGAAGACTAG
AA sequence Show only first row Show all	>Lus10035511 pacid=23147530 polypeptide=Lus10035511 locus=Lus10035511.g ID=Lus10035511.BGIv1.0 annot-version=v1.0 MKGKGKGTAKVTKEALKPADDRALDSSCLAWLASFTISSVDGESRIRLLQAASVFRKVGKRKAAPAAAVEKGNKPRARNVKKAKKDPNKPKRPPTAFFVF LEEFRKTFKKENPNANSVSAVGKAGGQKWREMSAAEKAPYEAKAGKKKDEYGELMNAYNNKQESDDGHGDKEDSDRSKSEVNNDDDEDVNDAPVAEEAHQ EKEEVEEEEEEEDDEEEEEDDDDED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	0	1
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	1.0	0.9449
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041184 [exp]	2.4	0.9343
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10037856 [exp]	3.2	0.9351
AT3G53490			unknown protein		Lus10015041 [exp]	4.0	0.9377
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10007450 [exp]	4.1	0.9247
AT3G60510			ATP-dependent caseinolytic (Cl...		Lus10028182 [exp]	5.7	0.9292
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	5.7	0.9249
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	8.1	0.9404
AT1G27340			Galactose oxidase/kelch repeat...		Lus10011354 [exp]	10.2	0.9150
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	12.2	0.9172

Compare expression of checked genes

Lus10035511 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.