Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08940 440 / 1e-157 LHCB4.2 light harvesting complex photosystem II (.1.2) AT5G01530 436 / 7e-156 LHCB4.1 light harvesting complex photosystem II (.1) AT2G40100 363 / 3e-127 LHCB4.3 light harvesting complex photosystem II (.1.2) AT3G54890 158 / 2e-47 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT4G10340 126 / 2e-34 LHCB5 light harvesting complex of photosystem II 5 (.1) AT1G45474 120 / 1e-32 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT3G47470 120 / 1e-32 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT2G34420 118 / 1e-31 LHCB1.5, LHB1B2 PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5, photosystem II light harvesting complex gene B1B2 (.1) AT1G29920 118 / 1e-31 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 118 / 1e-31 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028299 [exp] 373 / 5e-131 AT2G40100 412 / 7e-147 light harvesting complex photosystem II (.1.2) Lus10040191 [exp] 370 / 4e-130 AT2G40100 412 / 1e-146 light harvesting complex photosystem II (.1.2) Lus10037836 [exp] 345 / 6e-120 AT2G40100 399 / 2e-141 light harvesting complex photosystem II (.1.2) Lus10027786 [exp] 308 / 5e-106 AT3G08940 263 / 2e-88 light harvesting complex photosystem II (.1.2) Lus10040391 [exp] 155 / 3e-46 AT3G54890 371 / 1e-131 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10023509 [exp] 154 / 1e-45 AT3G54890 367 / 3e-130 photosystem I light harvesting complex gene 1 (.1.2.3.4) Lus10021730 [exp] 130 / 3e-36 AT1G45474 369 / 2e-130 photosystem I light harvesting complex gene 5 (.1.2) Lus10042657 [exp] 127 / 7e-35 AT1G45474 371 / 3e-131 photosystem I light harvesting complex gene 5 (.1.2) Lus10039156 [exp] 121 / 2e-32 AT4G10340 425 / 1e-151 light harvesting complex of photosystem II 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G099500 [exp] 456 / 1e-163 AT3G08940 474 / 7e-171 light harvesting complex photosystem II (.1.2) Potri.016G115200 [exp] 451 / 7e-162 AT3G08940 449 / 4e-161 light harvesting complex photosystem II (.1.2) Potri.008G067300 [exp] 374 / 8e-132 AT2G40100 420 / 7e-150 light harvesting complex photosystem II (.1.2) Potri.008G041000 [exp] 154 / 7e-46 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.010G221100 [exp] 148 / 3e-43 AT3G54890 392 / 4e-140 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.006G139600 [exp] 124 / 6e-34 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.019G063101 [exp] 124 / 8e-34 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1) Potri.003G171500 [exp] 120 / 2e-32 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.001G056700 [exp] 119 / 6e-32 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.014G029700 [exp] 119 / 6e-32 AT1G45474 306 / 3e-105 photosystem I light harvesting complex gene 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10035512 pacid=23147443 polypeptide=Lus10035512 locus=Lus10035512.g ID=Lus10035512.BGIv1.0 annot-version=v1.0 ATGGCCGCCACATCAGCAGCCGCCGCCGCCACGTCGTCCTTCATCGGCACAAGCCGACCCAGAATGTCCGCTAAATCCGGGCGGGTCGAGGCTCGGTTCG GGTTCGGAGCCAAGAAAGCGGCGCCTAAGAAGAAGGCGGCCAAGCCAACTTCGGACCGCCCGCTTTGGTACCCGGGTGCCCAGGCGCCCGAGTGGCTGGA CGGGACCCTGGTTGGTGACTACGGGTTCGACCCGTTCGGTCTGGGTAAGCCGGCTGAGTATTTGCAGTACGATATCGACTCGTTGGACCAGAACCTGGCT AAGAATTTGGCCGGAGAGATCATCGGGACCAGGACTGAGGACAGCGACGTGAAATCGACGCCGTTCCAGCCTTACAGCGAGGTGTTTGGGCTTCAGCGGG TCAGGGAGTGTGAGCTTATCCATGGGAGGTGGGCCATGTTGGCTACCCTCGGCGCTCTCACCGTCGAGTGGCTCACCGGCATCACCTGGCAAGACGCCGG CAAGGTGGAATTGGTGGAAGGATCCTCGTACCTAGGACAACCATTGCCGTTCTCGCTAACCTCCCTGATCTGGATCGAGGTGTTGGTGATCGGGTTCATC GAGTTCCAGAGGAACGCAGAGCTGGAGCCGGAGAAGAGGCTGTACCCGGGAGGGCCATTCGACCCCTTGGGACTGGCCACGGACCCGGAGAAGAAGGAGA GACTTCAGCTGGCGGAGATCAAGCACGCCCGGCTCGCAATGGTCGGGTTCCTGGGGTTTGCGGTTCAGGCTGCAGTTACGGGGAAGGGACCACTCAACAA CTGGGCCACTCACTTGAGCGACCCACTCCACACCACCATCATCGACAACTTGTCTTAG
AA sequence Show only first row Show all	>Lus10035512 pacid=23147443 polypeptide=Lus10035512 locus=Lus10035512.g ID=Lus10035512.BGIv1.0 annot-version=v1.0 MAATSAAAAATSSFIGTSRPRMSAKSGRVEARFGFGAKKAAPKKKAAKPTSDRPLWYPGAQAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDIDSLDQNLA KNLAGEIIGTRTEDSDVKSTPFQPYSEVFGLQRVRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSLTSLIWIEVLVIGFI EFQRNAELEPEKRLYPGGPFDPLGLATDPEKKERLQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10035512 [exp]	0	1
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10001644 [exp]	2.6	0.9442
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10039156 [exp]	2.8	0.9387
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10027786 [exp]	3.2	0.9422
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10020071 [exp]	3.7	0.9221
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10028226 [exp]	4.1	0.9085
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	4.2	0.9411
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10042219 [exp]	5.5	0.9296
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	10.0	0.9183
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	12.0	0.9211
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10020717 [exp]	12.7	0.9228

Compare expression of checked genes

Lus10035512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.