Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09070 221 / 2e-62 Protein of unknown function (DUF740) (.1) AT2G38070 179 / 7e-48 Protein of unknown function (DUF740) (.1) AT5G01170 144 / 3e-36 Protein of unknown function (DUF740) (.1) AT5G58930 98 / 3e-21 Protein of unknown function (DUF740) (.1) AT3G46990 76 / 3e-14 Protein of unknown function (DUF740) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027785 [exp] 780 / 0 AT3G09070 385 / 7e-125 Protein of unknown function (DUF740) (.1) Lus10040700 [exp] 96 / 3e-20 AT5G58930 221 / 2e-65 Protein of unknown function (DUF740) (.1) Lus10018206 [exp] 93 / 2e-19 AT5G58930 234 / 6e-70 Protein of unknown function (DUF740) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111400 [exp] 481 / 3e-161 AT3G09070 291 / 2e-88 Protein of unknown function (DUF740) (.1) Potri.006G096600 [exp] 466 / 8e-155 AT3G09070 283 / 3e-85 Protein of unknown function (DUF740) (.1) Potri.001G248400 [exp] 152 / 7e-39 AT5G58930 287 / 4e-90 Protein of unknown function (DUF740) (.1) Potri.009G042200 [exp] 152 / 9e-39 AT5G58930 268 / 5e-83 Protein of unknown function (DUF740) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05340 [flax] [poplar] DUF740 Protein of unknown function (DUF740)
Representative CDS sequence Show only first row Show all	>Lus10035513 pacid=23147340 polypeptide=Lus10035513 locus=Lus10035513.g ID=Lus10035513.BGIv1.0 annot-version=v1.0 ATGAATCCCTCCACAGCCACCGCCACCGCCACCGACCCTCAGCAGCTCCACCCACCGCAACCCCCACAGCCCCACCGCCCTTCTACTTCCTGCCCCCGCC ATCCTGAGGAAGAAAACTTCACTGGCTTCTGCCCTTCATGCCTCTGCGAACGCCTCGCCATCCTCGACCACTCTTCCTCCGCCGCCGCCACCTCCTCTTC CACCTCCTCCCGGAAGCCCCTCCTTGCCTCCGCCGCCCTTAGAGCCATTTTCAAACCCTCCTCCACCACCACCGCCGCCGCTACTAGCTCTTCTAATTCG TCTAATAAGCCTTCATTCTTCCCAGAGCTCCGCCGCTCCAAGTCATTCTCCGCCTCCAAGAACGAAGGGTTCTCCGGCGTGTTCGAGCCTCAGAGAAAGT CGTGCGACGTCAGGGGACGGAACACCCTCTGGCTTTTGTTCAACCAGGCCAATCCGACCGAAATCGAGCAGCCGCAGCCACCCAGATTTTCCGCCTCCGG TTCGTCGGTTTTGAAACCTGACGGATTCGAAGGGACGGAGAGTGAAGAAGAAGAGGAAGAAGAAGAAGAGAATGTCCGTGAAAATACGGACATTGTTGCT GATCCGCCGATTTTGACCGCGAGGAACTCGAACGCGAAGCCGATTGACGAAATCATCGAGGAAGAAGACGAACACGAAGAAGAAGAAGAAGAAGAAGAAG AAGAAGAAGAAGAAGAAATTGCAATTGAACCGCCAGTTGAAGAAGAAGAGGAAAAGACGATGAAGGACCACTTAGATCTCGATTCTTCTTCCCAAACGAA GAAGCGGGTCAGCTTCTGGTCAGCGGCGTCGGTCTTCAGCAAGAAACTACAGAAATGGAGGCAGAAGCAGAAGCTGAAGAAGCGCCGGAGCAACGGCGTC GGAAATGGGGTGATATCCGTATCCGGGACATTGCCGGTGGAGAAGCCAATCGGTAGGCAGTACAGAGAGACCCAGTCGGAAATCGCCGACTACGGATTCG GCAGGAGATCCTGCGACACGGATCCGAGATTCTCGCTCGACATCGGCCGGATGTCCTTCGACGATCCTCGCTACTCCTTCGACGAGCCACGCGCCTCCTG GGACGGTTACTTGATGGGAAGGACTTTCCCGACGAGAGCCCCTCTGTTACCCACCATGCTCTCTGTTGTCGAGGACGCTCCGGCGGTGATCAGATCCGAC GCTCATATCCCCGTCGAACAACCTCCACCTCCTCCGCCACCGCCGCAGGTGCCGGCGGCGATTCTTTCCGTCACCGAGGACGAGTTCGTCCCTGGTGGGT GTGCTCAGACGAGGGACTACTACACCGATTCATCATCCAGAAGGAGGAAGAGCCTGGACAGATCAAGCTCGATTCGGAGCACGGCGGCAGCGGTGGTTGC GGAGATTGACGAGCTGAAATCGGTCTCGTCCAACTCGAAAGTGTCTCCGGCGACGGTGGAGTCATCGTCGATAATCAACGGTCCGAAAGTAGATTACTTG AGGGAGTATTCACATTATTCAAACTCTCTCCGTGACGATTGCTCTGTCGAGACATTCGACAATGCCTCTATTGTGGGAGGAGGAGGGGATCGGAAGGAAA ACAACGGCGGTGGTGGTGCGAAGAAGTCGAAGAGGTGGGGGAAAGGATGGAGCATTTGGGGTTTTATACACAGGCGAAATGTGAATAAGGACGACGAGAG ATCATCATACAGAGGGGTTGGTGGTAATGGAGTTGAGAGGTCGTTTTCGGAGACATGGCCGGATTTGAGAGGGGAAAGGATGTTGAATGTGGGGAAAGGA GGAGGAGGTGGAGGGAGGTTCAATCCTAATCTAATGAGGAGTAACAGCAGTGTGAGTTGGAGGAATTCGAACGGATTCGGACCTTCGATCGGGTCATTTG GGAGCGGGAGGAAGAGCAATGTGGAGACTTGCAGCAGTGGGAATGGATTTGGAGGAAGGAAGAAGAGAGATGAGTTCATGCTGGAGAGGAACAGAAGTGC AAGGTATTCACCAAGTAATAATACTACTGTGGACAACAATGGTATGCTGAAATGGTACTTAGCTCCTCAAAGTGGTACAGGCCGGATCGCAGCGGCCAGT ACCACCAGAGGAGGATGGGGGAAGAGCAAAACGCATCAAGCACATTCCATAGCTAGGAGTGTATTGCGATTGTACTGA
AA sequence Show only first row Show all	>Lus10035513 pacid=23147340 polypeptide=Lus10035513 locus=Lus10035513.g ID=Lus10035513.BGIv1.0 annot-version=v1.0 MNPSTATATATDPQQLHPPQPPQPHRPSTSCPRHPEEENFTGFCPSCLCERLAILDHSSSAAATSSSTSSRKPLLASAALRAIFKPSSTTTAAATSSSNS SNKPSFFPELRRSKSFSASKNEGFSGVFEPQRKSCDVRGRNTLWLLFNQANPTEIEQPQPPRFSASGSSVLKPDGFEGTESEEEEEEEEENVRENTDIVA DPPILTARNSNAKPIDEIIEEEDEHEEEEEEEEEEEEEEIAIEPPVEEEEEKTMKDHLDLDSSSQTKKRVSFWSAASVFSKKLQKWRQKQKLKKRRSNGV GNGVISVSGTLPVEKPIGRQYRETQSEIADYGFGRRSCDTDPRFSLDIGRMSFDDPRYSFDEPRASWDGYLMGRTFPTRAPLLPTMLSVVEDAPAVIRSD AHIPVEQPPPPPPPPQVPAAILSVTEDEFVPGGCAQTRDYYTDSSSRRRKSLDRSSSIRSTAAAVVAEIDELKSVSSNSKVSPATVESSSIINGPKVDYL REYSHYSNSLRDDCSVETFDNASIVGGGGDRKENNGGGGAKKSKRWGKGWSIWGFIHRRNVNKDDERSSYRGVGGNGVERSFSETWPDLRGERMLNVGKG GGGGGRFNPNLMRSNSSVSWRNSNGFGPSIGSFGSGRKSNVETCSSGNGFGGRKKRDEFMLERNRSARYSPSNNTTVDNNGMLKWYLAPQSGTGRIAAAS TTRGGWGKSKTHQAHSIARSVLRLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	0	1
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	1.0	0.9541
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10009873 [exp]	1.7	0.8881
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10034607 [exp]	2.4	0.8751
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	2.4	0.9077
AT3G13980			unknown protein		Lus10025011 [exp]	3.7	0.8582
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	4.5	0.8800
AT2G40815			Calcium-dependent lipid-bindin...		Lus10030501 [exp]	5.7	0.8549
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	6.0	0.8836
AT5G66770	GRAS		GRAS family transcription fact...		Lus10041740 [exp]	7.2	0.8604
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022665 [exp]	7.7	0.8650

Compare expression of checked genes

Lus10035513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.