Plant FIBer expression Database

Lus10035515 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09050 251 / 8e-84 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027783
[exp]
438 / 3e-157 AT3G09050 265 / 3e-89 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G096700
[exp]
276 / 9e-94 AT3G09050 283 / 1e-96 unknown protein
PFAM info
Representative CDS sequence
>Lus10035515 pacid=23147476 polypeptide=Lus10035515 locus=Lus10035515.g ID=Lus10035515.BGIv1.0 annot-version=v1.0
ATGATTGCTTTCAAGGCCATTGGCGTCTCCTCCTTCACCATCCCAAAGCAACATCAACAACAACCCTTCTTACTCCTCACCAGAAGGCCCCCTAGAAACC
ACTCTCTTCTCTGCTTCTCCAAGCCCAGTGACGACTCCGACTCCGATTCTCCGCCGCCGCCAGAAGGTGATGGTGAAGGAGACACCCGCTGGCAAGAGCT
GCTTGCCAGGATAGTCCTGCTCCAAACTGAAAAAGTCCGCCTGACCGATTACCTAGACGAGAGATCTGATTACCTCACTCAATTTGCTGAAGAGGCCACC
GCCGAGATCGACAAGATCGGAGAGGATGCTCTCACTCGCCTTGACGAAGCCAGTTCCAGGATAATGGAGAAAATAGAGAGCGGCATGCAAGAATTCGAGG
AATCTGCAGAGATGAACAGAGCCGAGATTGAAGAGAACGATAACAAGTTGGTGGAATTCGAGGATCAGATAGTGAAGGATCGTAATGAAGGGATGTTCTT
TAAGAGCTTAGGTACGACGGCAGCACAGAAGGCGCCTATTGACAAAGGTAAGGCCATGGCAGAAGCGCAAAAGATCAAAGCTTTGACCAAAGCAAAAGCT
GAATCAGCTACCAGGAGAAACATTTACCTTGCTTTGATTGCATTGCTGGTGTTCACCATTGCTGAATCGTTTGCCGCCGGCCCAGATTGGCGTAAAGTTG
CAGTTCTTGGAGCAATCTTGGTGGGTTTGATAACTCAGGTGAGCTACGAGCAGAAGTTGTCATCAGATATAGAAAAGTCGGAAAAGGAAGACAAAAAGGA
GTAG
AA sequence
>Lus10035515 pacid=23147476 polypeptide=Lus10035515 locus=Lus10035515.g ID=Lus10035515.BGIv1.0 annot-version=v1.0
MIAFKAIGVSSFTIPKQHQQQPFLLLTRRPPRNHSLLCFSKPSDDSDSDSPPPPEGDGEGDTRWQELLARIVLLQTEKVRLTDYLDERSDYLTQFAEEAT
AEIDKIGEDALTRLDEASSRIMEKIESGMQEFEESAEMNRAEIEENDNKLVEFEDQIVKDRNEGMFFKSLGTTAAQKAPIDKGKAMAEAQKIKALTKAKA
ESATRRNIYLALIALLVFTIAESFAAGPDWRKVAVLGAILVGLITQVSYEQKLSSDIEKSEKEDKKE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G09050 unknown protein Lus10035515
[exp]
0 1
AT3G27925 DEGP, DegP1, DE... DegP protease 1 (.1) Lus10008781
[exp]
3.2 0.9453
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Lus10041904
[exp]
3.9 0.9486
AT1G71480 Nuclear transport factor 2 (NT... Lus10041048
[exp]
4.5 0.9323
AT4G40070 RING/U-box superfamily protein... Lus10034157
[exp]
4.9 0.9311
AT5G42760 Leucine carboxyl methyltransfe... Lus10032713
[exp]
6.5 0.9354
AT4G38225 unknown protein Lus10026560
[exp]
6.6 0.9236
AT1G73885 unknown protein Lus10005112
[exp]
7.1 0.9446
AT5G04440 Protein of unknown function (D... Lus10037929
[exp]
7.5 0.8995
AT1G51100 unknown protein Lus10040511
[exp]
8.0 0.9351
AT3G06483 ATPDHK, PDK pyruvate dehydrogenase kinase ... Lus10018337
[exp]
8.7 0.9286

Lus10035515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.