Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 866 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 860 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 685 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 624 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 570 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G68570 472 / 8e-161 Major facilitator superfamily protein (.1) AT2G40460 454 / 3e-154 Major facilitator superfamily protein (.1) AT5G46050 454 / 6e-154 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT4G21680 447 / 4e-151 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT2G26690 440 / 9e-149 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018207 [exp] 776 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 767 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10030947 [exp] 694 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 691 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 675 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 670 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040698 [exp] 663 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040100 [exp] 638 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10024300 [exp] 521 / 2e-180 AT3G54140 532 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111800 [exp] 907 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 898 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 813 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 800 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 799 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 692 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 640 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 525 / 0 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.005G233500 [exp] 505 / 2e-173 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G258900 [exp] 499 / 1e-171 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10035516 pacid=23147604 polypeptide=Lus10035516 locus=Lus10035516.g ID=Lus10035516.BGIv1.0 annot-version=v1.0 ATGGCTCAGAACATCGAGCAAGATGATAACTATACGAACGATGGAACGGTTGATATTCATGGAAACCCAGCTGATAAGCGGAAGACAGGAAACTGGAGAG CTTGCCGCTTCATTCTGGGGAACGAATGTTGCGAGAGATTGGCATACTACGGGATGAGTACCAACCTGGTGAACTTCCTTCAGGAACGTCTCAACATGGG GAATGCTAAAGCATCAACTACTGTCACCAACTGGTCAGGAACTTGCTACGCCACACCATTAATCGGAGCCTTCCTGGCTGATGCCTACTTAGGAAGATTC AAGACCATCACAATTTTTGTGATGGTCTACATCTGCGGGATGACACTCCTGACAATGTCCGCAGCTATTCCAGGACTCCGTCCATCTTGCAACGGAGATT CCTGCCAGGCCACATCAAGCCAGACCGCTGTATGCTTCGTAGCGCTCTACTTGATTGCTCTCGGAACCGGCGGAATCAAGCCGTGCGTTTCGTCCTTTGG TGCGGATCAGTTTGACGACAATGACGAGTCTGAGAAGAAGCAAAAGAGCTCCTTCTTCAACTGGTTCTACTTCTCGATCAACGTTGGTGCTATGGTCGCT TCCTCGGTGCTGGTGTGGATACAGATGAATGTTGGTTGGGACTGGGGGTTCGGGATTCCGGCAGTTGCCATGGCCGTTGCTATTGTGTTCTTCTTTGCAG GAAGCAAGCTGTACAGGGTTCAGAAACCTGGTGGAAGTCCCCTGACCAGGATTTTCCAGGTCATTGTTGCTTCTTTCAGAAAAGTGAATGTTGAAGTCCC AGATGATAAGTCGCTCCTCTATGAGATTGCTGATTCCGAAAGCTCCATCCAAGGCAGCCGCAGGCTTGAGCACACCGATGAGTTCAAGTTCTTTGACAAG GCAGCCGTAGAAACGAGAACCGAGGATACCAAGGGCGTACCAAACCCATGGAAACTCTGCACAGTGACCCAAGTCGAAGAGCTGAAATCCATCATCAGAC TGCTTCCAGTATGGGCAAGCGGCATCATATTCTCAGCAGTCTATAGCCAAATGTCCACAGTGTTCGTCCTCCAAGGCAACACGATGGACCAACACATCGG CCCGAAATTCAAGATCCCATCGGCATCACTCTCCCTCTTCGACACCTTAAGCGTCCTGTTCTGGGCTCCCGTATACGACCGCCTAATCGTCCCGGCAGCG AGAAACTTCACTGGCCACGAACACGGGTTCACCCAACTACAAAGGATGGGGATCGGACTCGTGATCTCGACCTTCGCCATGGTAGTCGCAGGAGTACTGG AAGTGGCTCGTCTCCAGATGGTGAGGCACCACGGCTACTACGACGTGGAGACGGTTCCGATGTCGATTTTCTGGCAGGTTCCGCAGTATTTCCTGGTGGG TTGTGCCGAAGTGTTTACCTTCATCGGTCAGCTCGAGTTCTTCTACGATCAGGCTCCTGACGCTATGAGGAGCCTCTGCTCGGCGCTGTCTCTGGCGACG GTGGCTCTGGGGAACTACCTGAGCACTCTGCTCGTCACGGTGGTGACTGAAGTGACGACGAAAGGTGGAAAGCTTGGGTGGATTCCTGACAACTTGAATA GAGGTCATCTGGATTACTTCTACTGGCTTCTGGCCATTCTGAGCTTGGTGAATTTCTTCATCTACCTGTGGATTGCTAAGTGGTATTCTTATAAGAAGAC CAGTGGGAAGGTCTGA
AA sequence Show only first row Show all	>Lus10035516 pacid=23147604 polypeptide=Lus10035516 locus=Lus10035516.g ID=Lus10035516.BGIv1.0 annot-version=v1.0 MAQNIEQDDNYTNDGTVDIHGNPADKRKTGNWRACRFILGNECCERLAYYGMSTNLVNFLQERLNMGNAKASTTVTNWSGTCYATPLIGAFLADAYLGRF KTITIFVMVYICGMTLLTMSAAIPGLRPSCNGDSCQATSSQTAVCFVALYLIALGTGGIKPCVSSFGADQFDDNDESEKKQKSSFFNWFYFSINVGAMVA SSVLVWIQMNVGWDWGFGIPAVAMAVAIVFFFAGSKLYRVQKPGGSPLTRIFQVIVASFRKVNVEVPDDKSLLYEIADSESSIQGSRRLEHTDEFKFFDK AAVETRTEDTKGVPNPWKLCTVTQVEELKSIIRLLPVWASGIIFSAVYSQMSTVFVLQGNTMDQHIGPKFKIPSASLSLFDTLSVLFWAPVYDRLIVPAA RNFTGHEHGFTQLQRMGIGLVISTFAMVVAGVLEVARLQMVRHHGYYDVETVPMSIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLAT VALGNYLSTLLVTVVTEVTTKGGKLGWIPDNLNRGHLDYFYWLLAILSLVNFFIYLWIAKWYSYKKTSGKV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	0	1
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	2.2	0.9590
AT5G09730		ATBXL3, XYL3, B...	beta-xylosidase 3 (.1)		Lus10025036 [exp]	4.4	0.9151
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	4.5	0.9502
AT5G17890		CHS3, DAR4	CHILLING SENSITIVE 3, DA1-rela...		Lus10025852 [exp]	6.9	0.9175
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	8.0	0.9487
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	8.3	0.9495
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	8.8	0.9337
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	12.0	0.9158
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	12.5	0.9365
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	14.9	0.9046

Compare expression of checked genes

Lus10035516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.