Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01210 479 / 4e-168 HXXXD-type acyl-transferase family protein (.1) AT2G39980 430 / 1e-148 HXXXD-type acyl-transferase family protein (.1) AT5G42830 211 / 7e-64 HXXXD-type acyl-transferase family protein (.1) AT5G07850 199 / 3e-59 HXXXD-type acyl-transferase family protein (.1) AT5G07860 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) AT5G07870 192 / 3e-56 HXXXD-type acyl-transferase family protein (.1) AT5G23940 169 / 1e-47 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT5G67150 154 / 3e-42 HXXXD-type acyl-transferase family protein (.1) AT3G50270 137 / 8e-36 HXXXD-type acyl-transferase family protein (.1) AT3G50280 133 / 2e-34 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028267 [exp] 418 / 8e-144 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 415 / 8e-143 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10027779 [exp] 335 / 8e-114 AT5G01210 350 / 7e-119 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 181 / 3e-52 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 178 / 5e-51 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039256 [exp] 175 / 7e-50 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10027778 [exp] 157 / 2e-47 AT5G01210 141 / 6e-42 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 164 / 6e-46 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 155 / 1e-42 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G097500 [exp] 521 / 0 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 518 / 0 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 418 / 1e-143 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 401 / 5e-137 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 229 / 2e-70 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 227 / 9e-70 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025600 [exp] 222 / 5e-68 AT5G42830 565 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.015G147300 [exp] 183 / 3e-53 AT5G23940 578 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.012G144500 [exp] 184 / 7e-53 AT5G23940 590 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 181 / 1e-52 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10035519 pacid=23147482 polypeptide=Lus10035519 locus=Lus10035519.g ID=Lus10035519.BGIv1.0 annot-version=v1.0 ATGCCGTCTTCTTCCACCACTATCGTCTCCAAATGCACCATCTTCCCCAACCCAAATTCCGCCACCGGAAAAACCCTGAAGCTCTCTGTTTCCGATCTTC CCATGCTTTCCTGCCACTACATCCAAAAGGGCGTCCTCCTCTCCAAACCACCTTATCCATCTCCTCACCTAATCTCCCTCCTCAAAACCTCCCTCTCTGG CGCCCTCTCCCACTTCCCCGCCCTCGCCGGCCGCCTTACCACCGCATCGATCGCCGCCGTCCAGGTCACGGAGCTTTCAGACGGTGTCTTCGTCGCCTGC ATTGTCAATCACGCCGTCACTGATGGCACCTCCTTCTGGCATTTCTTCAACACTTTCGCTGAATTAGCTAAAGGCGCTATGAAAATTTCCAATTCGCCTG ATTTCTGTAGGGACACCGTGTTTAATTCCCCCGCCGTACTCGAATTCCCCCCCGGTGGACCTAAGGTTACCTTCTCTGGCGACGTACCCCTCCGGGAGAG GGTTTTCCATTTCAGCAGAGAAGCCATCCTGAAGCTGAAAAACAGAGCAAACCTTAATAATAACGCCGTTACCGTCAACGTTAACGGTAACGGTAATTTC GGCTTCGTATCGGTGGAGGAGATAATCGGAAAACAGAGGAACGACAAAACAGGGTCGTCTCAGATCTCGTCGTTTCAATCTCTTTCAGCTCAGCTGTGGA GATCGGTCACACGTGCGAGGAATCTGCATCCCACTAAAACGACGACGTTTCGGATGGCTGTGAACTGCCGCCACCGGCTCGAGCCGCGGCTGAGTGCGTA CTACTTCGGGAACCTGATACAGAGCATTCCGACTCTGGCTCCGGCGGGAGAGCTTTTAGCCAACGATTTAAGCTGGTGCGCCGAGCTGCTCCACCAAAAC GTCGTCGCACACGGGGACACTACGGTGCGTAAGGGCGTAGCGAATTGGGAGATGGACCCTCGGCTGTTTCCCTTGGGGAACGCCGACGGCGCGTCGATTA CGATGGGAAGCTCACCGAGGTTTCCAATGTACAACAACGATTTCGGATGGGGAAAGCCGCTGGCGATCAGGAGCGGGAAGGCGAATAAGTTCGACGGGAA GATTTCGGCCTTTCCAGGGAGAGAAGGGGACGGGAGCGTTGACCTTGAGGTGGTGTTGGCGCCGGAGACGATGGCTGGAGTTGAGGAGGATGAGGAGTTC ATGCAGTACGTTTCGGAAACGGTTTGA
AA sequence Show only first row Show all	>Lus10035519 pacid=23147482 polypeptide=Lus10035519 locus=Lus10035519.g ID=Lus10035519.BGIv1.0 annot-version=v1.0 MPSSSTTIVSKCTIFPNPNSATGKTLKLSVSDLPMLSCHYIQKGVLLSKPPYPSPHLISLLKTSLSGALSHFPALAGRLTTASIAAVQVTELSDGVFVAC IVNHAVTDGTSFWHFFNTFAELAKGAMKISNSPDFCRDTVFNSPAVLEFPPGGPKVTFSGDVPLRERVFHFSREAILKLKNRANLNNNAVTVNVNGNGNF GFVSVEEIIGKQRNDKTGSSQISSFQSLSAQLWRSVTRARNLHPTKTTTFRMAVNCRHRLEPRLSAYYFGNLIQSIPTLAPAGELLANDLSWCAELLHQN VVAHGDTTVRKGVANWEMDPRLFPLGNADGASITMGSSPRFPMYNNDFGWGKPLAIRSGKANKFDGKISAFPGREGDGSVDLEVVLAPETMAGVEEDEEF MQYVSETV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10035519 [exp]	0	1
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027779 [exp]	1.4	0.9381
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10027778 [exp]	2.0	0.9322
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	11.6	0.9016
AT3G45230			hydroxyproline-rich glycoprote...		Lus10041306 [exp]	13.3	0.8969
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	15.3	0.8926
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10019675 [exp]	15.6	0.8745
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	17.0	0.8917
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	17.9	0.8748
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031730 [exp]	18.3	0.8916
					Lus10042011 [exp]	19.2	0.8836

Compare expression of checked genes

Lus10035519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.