Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027777 [exp] 163 / 4e-52 AT3G09032 61 / 3e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112700 [exp] 45 / 2e-06 AT5G01225 73 / 3e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035520 pacid=23147484 polypeptide=Lus10035520 locus=Lus10035520.g ID=Lus10035520.BGIv1.0 annot-version=v1.0 ATGTCTCGGAAACCAAGCAAGCGGGTCACCTTCTTCACCCCCAATTACTCAACCGAAAACCCAACCGCAGTGTTCCTCAAACATTCCACTTTCGATTCCT GCAGAGTCGCCGCCGGTGCCGGAAACCGGAAGGGGGTCGGCGCCTCCGAGGCCGTCGTCGGAATCTTCAGCTTCAGGATGCATCACCGCCGGGTGAGAAT ATTCAGGGTCTCTCCTCCCTGCCGGTTCTTCAGACGGCTCGGCGCAAAGCTGGCTAGAGCTCTGCGGTTTGTCTCCCTTCGGACGAGAAGAAGAAGACGG AAAATGAGTAAGTCACCGCCGGTGAGGTTGTCCGCCAGTGAAGACTCTCAAAGGATTGAAGCGATTGAAGACTGCATAGAGTTCTTGAATTCGTCGTCTT CTTGGTGCTGCGGCGACTCTCTGTCCAGGTCCAGCTCTGTTTCCGTTAGAACAGAGTAG
AA sequence Show only first row Show all	>Lus10035520 pacid=23147484 polypeptide=Lus10035520 locus=Lus10035520.g ID=Lus10035520.BGIv1.0 annot-version=v1.0 MSRKPSKRVTFFTPNYSTENPTAVFLKHSTFDSCRVAAGAGNRKGVGASEAVVGIFSFRMHHRRVRIFRVSPPCRFFRRLGAKLARALRFVSLRTRRRRR KMSKSPPVRLSASEDSQRIEAIEDCIEFLNSSSSWCCGDSLSRSSSVSVRTE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09032			unknown protein		Lus10035520 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	6.6	0.9120
AT4G25030			unknown protein		Lus10036513 [exp]	11.2	0.8979
AT1G80180			unknown protein		Lus10030064 [exp]	26.9	0.8932
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	29.2	0.8656
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	37.2	0.8614
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	38.1	0.8757
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	58.5	0.8770
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	60.3	0.8592
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	62.6	0.8598
AT3G15518			unknown protein		Lus10032656 [exp]	68.2	0.8705

Compare expression of checked genes

Lus10035520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.