Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40770 184 / 4e-57 ATPHB3 prohibitin 3 (.1) AT3G27280 183 / 1e-56 ATPHB4 prohibitin 4 (.1.2) AT5G14300 133 / 2e-37 ATPHB5 prohibitin 5 (.1) AT4G28510 131 / 2e-36 ATPHB1 prohibitin 1 (.1) AT2G20530 130 / 5e-36 ATPHB6 prohibitin 6 (.1.2) AT5G44140 129 / 1e-35 ATPHB7 prohibitin 7 (.1) AT1G03860 129 / 2e-35 ATPHB2 prohibitin 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027776 [exp] 319 / 5e-111 AT5G40770 173 / 9e-54 prohibitin 3 (.1) Lus10014604 [exp] 187 / 3e-58 AT5G40770 482 / 2e-174 prohibitin 3 (.1) Lus10032072 [exp] 187 / 4e-58 AT5G40770 486 / 7e-176 prohibitin 3 (.1) Lus10034395 [exp] 137 / 1e-38 AT1G03860 429 / 3e-153 prohibitin 2 (.1.2.3) Lus10019161 [exp] 136 / 3e-38 AT4G28510 434 / 4e-155 prohibitin 1 (.1) Lus10042515 [exp] 134 / 3e-37 AT1G03860 433 / 9e-155 prohibitin 2 (.1.2.3) Lus10021978 [exp] 132 / 1e-36 AT1G03860 436 / 9e-156 prohibitin 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G065800 [exp] 195 / 3e-61 AT5G40770 433 / 7e-155 prohibitin 3 (.1) Potri.001G335700 [exp] 195 / 4e-61 AT5G40770 429 / 3e-153 prohibitin 3 (.1) Potri.017G017400 [exp] 131 / 2e-36 AT4G28510 457 / 5e-164 prohibitin 1 (.1) Potri.007G134700 [exp] 129 / 1e-35 AT4G28510 463 / 2e-166 prohibitin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10035521 pacid=23147573 polypeptide=Lus10035521 locus=Lus10035521.g ID=Lus10035521.BGIv1.0 annot-version=v1.0 ATGCAAACCGGAGCTTCCGTTTCCCGCTTTACTTCCCTGGCCAGAAAATTTCTCCCCGCGGCAGCACTCAGCACCACCGTTGCCGCCGCCTACTACGCCT CGGAGTTCACAGTTCCGCCAGGGCATAGAGCCGTGATTTTGAACCGGTTCCACGGAGTCAGGGAAACCTCAATCGGCGAAGGAACTCATTTCGCAATCCC CTGGATTCAGAAGCCGTACATCGTCGACGTCCGCGATAAACACCACACCTTCTCCTGCGCCTCCCACACAAAGGACCTGCATCCCGTCAATCTATCCCTT CGAGTCTCCCTCCGTCCCGAGCTGTCGAACTTGCCAGAGACCCTCCAACATTTCGGCCTCGACTACGACGAGAGAGTGCTACCTGCCATATGCAGCGAGG TAGACTCCATAATTGCTAATTACAACGTGGATCGCCTCCTTACTACGGAGAATAATAATAGCAATTTGTTGGATGATATCCATGGCTCTCTGGTTGAACG TGGGAAGTTGTTCCACCTAGTTGTTGATGGTGTTTCGGTTGTAGATATTTCGTTGAGCGAAGAGTTGTCTAAGGCTGTTGAGGAAAAGCAATTGGCAAGA AAGGAGGCTGAGATGTCGAATGATATTGTGATGAAGGCTGAACATGAGAAGGAAGCTGCCATTCGGAAAGCAGAAGAGGAGTTACAGGCTGCAAAGCAGG TAGCTGAGTTGTCTGCAGATGTTCATGAGCAGTTGCTTCATCTGGTGAGGATGGAAGCGGAGAGGGAAATCGTCAAGGCTCGTGCCAAGTTCGAGAATGT GGCGAGCCTTGCTAGATCAGAGGAGAAGGAGGATGGTACAGGCAATCCGAGCAGTTGA
AA sequence Show only first row Show all	>Lus10035521 pacid=23147573 polypeptide=Lus10035521 locus=Lus10035521.g ID=Lus10035521.BGIv1.0 annot-version=v1.0 MQTGASVSRFTSLARKFLPAAALSTTVAAAYYASEFTVPPGHRAVILNRFHGVRETSIGEGTHFAIPWIQKPYIVDVRDKHHTFSCASHTKDLHPVNLSL RVSLRPELSNLPETLQHFGLDYDERVLPAICSEVDSIIANYNVDRLLTTENNNSNLLDDIHGSLVERGKLFHLVVDGVSVVDISLSEELSKAVEEKQLAR KEAEMSNDIVMKAEHEKEAAIRKAEEELQAAKQVAELSADVHEQLLHLVRMEAEREIVKARAKFENVASLARSEEKEDGTGNPSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10035521 [exp]	0	1
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10029734 [exp]	1.7	0.8021
AT2G07715			Nucleic acid-binding, OB-fold-...		Lus10037433 [exp]	41.4	0.6998

Compare expression of checked genes

Lus10035521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.