Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05780 549 / 0 RPN8A, AE3, ATHMOV34 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) AT3G11270 546 / 0 MEE34 maternal effect embryo arrest 34, Mov34/MPN/PAD-1 family protein (.1.2) AT2G39990 100 / 3e-24 AteIF3f, EIF2 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) AT4G26430 89 / 6e-20 CSN6B COP9 signalosome subunit 6B (.1) AT5G56280 86 / 5e-19 CSN6A COP9 signalosome subunit 6A (.1) AT1G10840 50 / 1e-06 TIF3H1 translation initiation factor 3 subunit H1 (.1.2) AT5G23540 42 / 0.0002 Mov34/MPN/PAD-1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027775 [exp] 623 / 0 AT5G05780 555 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Lus10028272 [exp] 125 / 1e-33 AT2G39990 431 / 9e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10040218 [exp] 124 / 4e-33 AT2G39990 423 / 2e-150 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Lus10027082 [exp] 77 / 1e-15 AT5G56280 527 / 0.0 COP9 signalosome subunit 6A (.1) Lus10007054 [exp] 49 / 3e-06 AT1G10840 558 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Lus10020427 [exp] 48 / 5e-06 AT1G10840 570 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Lus10035470 [exp] 42 / 0.0003 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10031085 [exp] 42 / 0.0003 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 42 / 0.0004 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G065200 [exp] 568 / 0 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.008G065300 [exp] 566 / 0 AT5G05780 568 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192200 [exp] 558 / 0 AT5G05780 560 / 0.0 ASYMMETRIC LEAVES ENHANCER 3, RP non-ATPase subunit 8A (.1.2) Potri.010G192000 [exp] 117 / 1e-30 AT2G39990 431 / 7e-154 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.011G169900 [exp] 97 / 3e-23 AT5G56280 511 / 0.0 COP9 signalosome subunit 6A (.1) Potri.008G065500 [exp] 75 / 2e-15 AT2G39990 306 / 3e-105 Arabidopsis thaliana eukaryotic translation initiation factor 3 subunit F, eukaryotic translation initiation factor 2 (.1) Potri.002G233500 [exp] 45 / 3e-05 AT1G10840 555 / 0.0 translation initiation factor 3 subunit H1 (.1.2) Potri.002G127900 [exp] 42 / 0.0003 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.014G032900 [exp] 42 / 0.0004 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [flax] [poplar] JAB PF01398 [flax] [poplar] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Lus10035522 pacid=23147652 polypeptide=Lus10035522 locus=Lus10035522.g ID=Lus10035522.BGIv1.0 annot-version=v1.0 ATGGATGTAATCAAGACTCAGCAGGTACAGTCGAGGCCGATCGATAAGGTTGTGGTGCATCCTCTGGTTCTCCTCAGCATCGTCGACAACTACAACCGAG TTGCCAAGGACACTCGCAAACGTGTCGTCGGAGTTTTGCTCGGAAGCTCGTTCAAGGGCACCGTCGATGTCTCCAATAGCTTCGCAGTGCCCTTTGAAGA AGATGATAAGGACCCCAGCATATGGTTCCTTGACCACAACTATCACGAATCCATGTTCTCGATGTTCAAAAGAATTAATGCTAAGGAGCATGTTGTGGGA TGGTATAGCACTGGACCAAAACTAAGGGAGAACGACCTGGAGATTCACCAGTTATTCCACAACTATGTACCGAATCCTGTACTGGTAATCATTGATGTCC AGCCTAAGGAGCTTGGGATTCCAACCAAGGCATACTATGATGTGGAAGAAGTTAAAGAGAATGCCACTCAGAAGAGCCAGAAGGTTTTCGTTCATGTCCC TTCAGAAATCGCTGCTCACGAGGTTGAAGAAATCGGAGTTGAGCACTTGCTGAGAGATGTTAAAGATACAACCATAAGCACACTTGCAACTGAGGTTGGT GATAAACTTATAGCACTGAAAGGATTGGATGCACGGCTCCGGGAAATTCGTGGTTACCTTGATCTTGTCATTGATGAGAAGCTTCCTCTGAATCACGAGA TACTTTACCATTTGCAAGATGTATTTAACTTGCTACCTAATCTCAACGTCACCGAACTGATAAAGGCTTTCTCTGTTAAAACAAATGACATGATGCTAGT GATATATCTCTCATCTGTGATCCGAAGTGTCATTGCCCTTCACAACCTGATCAATAATAAGATATCCAACAAAGAGCATGAGAAAGCCGAGGATGCGAAA CCTGCTACCGTCCCGATTGCCAACGGAGCCTGA
AA sequence Show only first row Show all	>Lus10035522 pacid=23147652 polypeptide=Lus10035522 locus=Lus10035522.g ID=Lus10035522.BGIv1.0 annot-version=v1.0 MDVIKTQQVQSRPIDKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSFAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVG WYSTGPKLRENDLEIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVG DKLIALKGLDARLREIRGYLDLVIDEKLPLNHEILYHLQDVFNLLPNLNVTELIKAFSVKTNDMMLVIYLSSVIRSVIALHNLINNKISNKEHEKAEDAK PATVPIANGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	0	1
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	2.0	0.8277
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10039932 [exp]	3.2	0.7976
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	3.5	0.7966
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	4.0	0.8132
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10042595 [exp]	4.9	0.8118
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	4.9	0.8116
AT2G19080			metaxin-related (.1)		Lus10020010 [exp]	6.3	0.7740
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10006870 [exp]	7.7	0.7632
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	8.8	0.7660
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10017371 [exp]	8.8	0.7945

Compare expression of checked genes

Lus10035522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.