Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016944 [exp] 160 / 1e-49 ND / Lus10027774 [exp] 113 / 7e-32 ND / Lus10006537 [exp] 100 / 9e-27 ND / Lus10006539 [exp] 100 / 1e-26 ND / Lus10001546 [exp] 88 / 9e-22 ND / Lus10002859 [exp] 71 / 3e-15 ND / Lus10041677 [exp] 64 / 2e-12 ND / Lus10041676 [exp] 61 / 3e-11 ND / Lus10039441 [exp] 57 / 1e-09 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035524 pacid=23147554 polypeptide=Lus10035524 locus=Lus10035524.g ID=Lus10035524.BGIv1.0 annot-version=v1.0 ATGACAGTGTTCAAGCTATCATCCGACAAGCATTTCCTCCGAACATTCAAAGGCGATCCGGCCATCCACGTGTACGAGTATCTGGACGATCCAAACGCCT TCGACATGATCCGAGCCAGCAACTCCCGCTGGACTTTCCTCGCCAAAGTGAGTCATCATCATTCGACGCCGTTTAAGGAGCTGGAGGTTCTGGGCGTGAC GATCCGGTCCAACCAGCTGACCCAGCTGGCCAACGATCTGACCCTGACGGCCGAGGGCGGCGGTCAGACCTTCCACCTCATAGTCAACCGTCAGGGACTC TGTTTCCTGTACGTCAACAGTCCGAGTTCCGTTATGCGGCTGAGGGTCAACGACTACTTCGGCTGGTCAAGGTACGGTGTTAATACTAGCAGTCAGGTAA TTTGGAACAGGTGGGATATGAGCAGCGGCGCCGTTTTGGTTCCGGCGGCTGCGGCGGGGTCGGGGAGTGAAGAGGGTTGCCTGAAGAAGCTTCTGGAGGA GAAGGATAAGGTTTTGGAGATGAAGGATAAGGAGCTAGCTGCTCTCAAGCTTGCCATGAAGGCCTTGGTGCACGACATGTAG
AA sequence Show only first row Show all	>Lus10035524 pacid=23147554 polypeptide=Lus10035524 locus=Lus10035524.g ID=Lus10035524.BGIv1.0 annot-version=v1.0 MTVFKLSSDKHFLRTFKGDPAIHVYEYLDDPNAFDMIRASNSRWTFLAKVSHHHSTPFKELEVLGVTIRSNQLTQLANDLTLTAEGGGQTFHLIVNRQGL CFLYVNSPSSVMRLRVNDYFGWSRYGVNTSSQVIWNRWDMSSGAVLVPAAAAGSGSEEGCLKKLLEEKDKVLEMKDKELAALKLAMKALVHDM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035524 [exp]	0	1
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10034272 [exp]	2.0	0.8645
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10039797 [exp]	2.6	0.8775
AT4G30410			sequence-specific DNA binding ...		Lus10015500 [exp]	6.5	0.7987
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	13.4	0.8310
AT2G44650		CHL-CPN10	chloroplast chaperonin 10 (.1)		Lus10019497 [exp]	13.4	0.7992
AT2G32580			Protein of unknown function (D...		Lus10035349 [exp]	13.6	0.8174
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	17.2	0.8343
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10018763 [exp]	18.7	0.8246
AT3G07460			Protein of unknown function, D...		Lus10038238 [exp]	19.5	0.7471
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	20.6	0.8369

Compare expression of checked genes

Lus10035524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.