Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38150 409 / 3e-141 alpha 1,4-glycosyltransferase family protein (.1) AT5G01250 342 / 4e-115 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 337 / 5e-113 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 322 / 2e-107 alpha 1,4-glycosyltransferase family protein (.1) AT1G61050 286 / 1e-92 alpha 1,4-glycosyltransferase family protein (.1) AT4G19900 128 / 5e-32 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027772 [exp] 733 / 0 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10027771 [exp] 578 / 0 AT2G38150 317 / 8e-97 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 565 / 0 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10002496 [exp] 506 / 4e-179 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1) Lus10035526 [exp] 361 / 4e-122 AT5G01250 362 / 6e-123 alpha 1,4-glycosyltransferase family protein (.1) Lus10027770 [exp] 354 / 2e-119 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10011206 [exp] 288 / 1e-92 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1) Lus10018315 [exp] 138 / 3e-35 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10017137 [exp] 134 / 2e-33 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114200 [exp] 397 / 2e-136 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.011G047700 [exp] 318 / 3e-105 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.004G039300 [exp] 311 / 1e-102 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 241 / 2e-78 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1) Potri.015G122200 [exp] 102 / 3e-23 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04488 [flax] [poplar] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [flax] [poplar] PF04572 [flax] [poplar] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Lus10035525 pacid=23147474 polypeptide=Lus10035525 locus=Lus10035525.g ID=Lus10035525.BGIv1.0 annot-version=v1.0 ATGATCTCTCGCCACAAATCCACAGCAACAGAATTCTCGAAGATGGTCAAGAAAATGGCTAAGAAGCTGATGTTCGATTACCGCACCTTACCCAAAACTG CCAAAACACCAATCTTCTCCGCCATCTCCTTCGCAAGTCTGTTCTTCATCCTCTACTTAGACACCACCTTCCGCACTAATGATCATCCCGACGTGGCGCA TCGACTCGAGATCACAACACGAATGAGCATCGATTCGGGCGAAGAAGAAGAATCTGTAGTCGACCCACTAGTGCCTCCCGTGAACGTGACCGTAGCGGGG AGGATAGAGTGGTTCAGGCAGAAACTGCCCGAACTGGACCTGCTCAACTCGAACGATAAATTGAGCAAGTCCTTCCACAGCCGAGTCGTCGACTTCTTCG ACGAGAAAAACAACTGCTCGGTCCAGTTCTACATGGTGTGGCTCTCGCCGGCCAGAACGTTTGGACCCAGGGAGTTTCTGGCAGCAGACACGCTGTTCAA GTCCAATCCGAACTCGTGCCTGGTCATCATTTCAAGATCTATGGACTCAAAAATCGGAGCAAAAATTCTCCAGCCTCTGCTCGATCTCGGGTTCAAAGTC CTCGCAGTCACGCCGAACGTGCCATTTCTAGTAGAGGACACACCAGGTGAAGACTGGCTAGCAGAATTAAAAACCGGGACCAAGGATCCCGGATACATCC CGCTAACCATGAACCTTTCGAATTTGATACGAATTGCAATGATCTACAAGTATGGAGGCGTGTACTTGGACACGGACTTCATAGTCCTGAAGGACTTCTC GGGGCTGAGGAATGCAGTCGGGGCGCAGACTATCGATCCGACAACGAACCAATGGAGCAGCATCAACAATGCGGTGGTCATCTTCGACAGCGGGCACCCT ATGGTGCTCGAATTCATCAAAGAATTTGCGAACACGTTCAACGGGAACAAGTGGGGGAACAACGGCCCTGGAATGTTTACCAGGGTGTTGGAGAGAGTTG TGCATCGGAATGTGACAATCATGCCTCCAAAAGCGTTCTATCCAGTCGACTGGATCGAGATTCGGAAGCTGTTCAAGACGCTGGTGACTAGCTCTCGGAT GAGATGGGCGGAGGGGCTGCTGGGGGATCTGAAGCGGGATAGCTATGCGTTGCATCTGTGGAATAAGAGGAGCAGGCAGTTGACTGTTGAAGAAGGGAGT GTGATGGATAGGTTGATTTCAGATCACTGTGTTGTCTGCCAACACATCAACCATGCCTGA
AA sequence Show only first row Show all	>Lus10035525 pacid=23147474 polypeptide=Lus10035525 locus=Lus10035525.g ID=Lus10035525.BGIv1.0 annot-version=v1.0 MISRHKSTATEFSKMVKKMAKKLMFDYRTLPKTAKTPIFSAISFASLFFILYLDTTFRTNDHPDVAHRLEITTRMSIDSGEEEESVVDPLVPPVNVTVAG RIEWFRQKLPELDLLNSNDKLSKSFHSRVVDFFDEKNNCSVQFYMVWLSPARTFGPREFLAADTLFKSNPNSCLVIISRSMDSKIGAKILQPLLDLGFKV LAVTPNVPFLVEDTPGEDWLAELKTGTKDPGYIPLTMNLSNLIRIAMIYKYGGVYLDTDFIVLKDFSGLRNAVGAQTIDPTTNQWSSINNAVVIFDSGHP MVLEFIKEFANTFNGNKWGNNGPGMFTRVLERVVHRNVTIMPPKAFYPVDWIEIRKLFKTLVTSSRMRWAEGLLGDLKRDSYALHLWNKRSRQLTVEEGS VMDRLISDHCVVCQHINHA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10035525 [exp]	0	1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10033427 [exp]	1.0	0.9995
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	2.0	0.9964
					Lus10003755 [exp]	3.5	0.9908
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	5.5	0.9889
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10019195 [exp]	6.0	0.9886
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	7.1	0.9516
					Lus10030912 [exp]	8.5	0.9893
					Lus10038295 [exp]	9.4	0.9708
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	9.9	0.9707
AT2G24050		eIFiso4G2	eukaryotic translation Initiat...		Lus10036256 [exp]	10.1	0.8803

Compare expression of checked genes

Lus10035525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.