Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01250 340 / 4e-114 alpha 1,4-glycosyltransferase family protein (.1) AT2G38150 328 / 9e-110 alpha 1,4-glycosyltransferase family protein (.1) AT3G09020 323 / 2e-107 alpha 1,4-glycosyltransferase family protein (.1) AT2G38152 315 / 1e-104 alpha 1,4-glycosyltransferase family protein (.1) AT1G61050 301 / 1e-98 alpha 1,4-glycosyltransferase family protein (.1) AT4G19900 126 / 2e-31 alpha 1,4-glycosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027770 [exp] 644 / 0 AT5G01250 366 / 2e-124 alpha 1,4-glycosyltransferase family protein (.1) Lus10027771 [exp] 370 / 9e-117 AT2G38150 317 / 8e-97 alpha 1,4-glycosyltransferase family protein (.1) Lus10027772 [exp] 347 / 1e-116 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10035525 [exp] 344 / 1e-115 AT2G38150 409 / 2e-141 alpha 1,4-glycosyltransferase family protein (.1) Lus10004828 [exp] 340 / 1e-113 AT2G38150 430 / 2e-149 alpha 1,4-glycosyltransferase family protein (.1) Lus10011206 [exp] 295 / 1e-95 AT1G61050 345 / 5e-115 alpha 1,4-glycosyltransferase family protein (.1) Lus10002496 [exp] 290 / 2e-94 AT2G38150 388 / 4e-133 alpha 1,4-glycosyltransferase family protein (.1) Lus10017137 [exp] 119 / 2e-28 AT4G19900 693 / 0.0 alpha 1,4-glycosyltransferase family protein (.1) Lus10018315 [exp] 112 / 2e-26 AT4G19900 699 / 0.0 alpha 1,4-glycosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114200 [exp] 430 / 2e-149 AT3G09020 419 / 3e-145 alpha 1,4-glycosyltransferase family protein (.1) Potri.011G047700 [exp] 330 / 1e-109 AT1G61050 389 / 1e-132 alpha 1,4-glycosyltransferase family protein (.1) Potri.004G039300 [exp] 318 / 3e-105 AT1G61050 393 / 4e-134 alpha 1,4-glycosyltransferase family protein (.1) Potri.006G098900 [exp] 284 / 5e-95 AT2G38152 258 / 1e-85 alpha 1,4-glycosyltransferase family protein (.1) Potri.015G122200 [exp] 99 / 7e-22 AT4G19900 420 / 7e-138 alpha 1,4-glycosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04488 [flax] [poplar] Gly_transf_sug Glycosyltransferase sugar-binding region containing DXD motif CL0110 [flax] [poplar] PF04572 [flax] [poplar] Gb3_synth Alpha 1,4-glycosyltransferase conserved region
Representative CDS sequence Show only first row Show all	>Lus10035526 pacid=23147351 polypeptide=Lus10035526 locus=Lus10035526.g ID=Lus10035526.BGIv1.0 annot-version=v1.0 ATGAGGAAAGTTATCGACAGAAAGCCTCTGGTTTTATTCTCACTGGTTTTGATCATCTTCATCATTCGTACGAGTTTGATCCCCACTGTAGTAGTGGTAG TCCCTCTTCAATCTTCTTCCTCTTCACCTTCGTTAGTAACCCACAAATCCTCTGAAGAAACAATAACGAGAAGGAGAATAGAATCGGCTGAGTTCCACCA GGAAGACGGAGATGGAGTGGTGGAGCAGAGTTACTTAGTCCCACCGTTGAACCTGACAACACAGGAAAGAATCCATTGGTTCAGGAAAAATCTCCCGAAT TTCCAGATTCTCAAGTCGGAGGACAAACTGACGAGCAGGTTTCAGAATCGGATGCAGGAATTCGTCCGAGGCGGCCGTTGCGGGGGAGAAGACGATCAAT TGTTGTTCTTCATGACATGGATTTCGCCAGCCGGATCGTTCGGCCAGCGGGAGTTTCTGGCGGTGGAGACCCTGTTCAAGTCCAATCCTGACGGATGTTT AATCATCCTATCGAAATCTCTCGATTCCAGCAAAGGCCGCAGGATCCTGCGGCCTTTGCTCGACCGTGGATACAAAGGGTCCGCGATGTCCCCCGATTTA AACCACCTGTTTCGGGGGACGCCGGCGGAGTCCTGGTACGACGACCTGAGGCGCGGGGAGAAAGATCCCGGCGAGATCTCGCTGGCTCAGAACCTGTCGA ATTTGATCCGACTGGCGGTCCTATACAAGTACGGCGGGGTGTACTTGGACACGGACGTCATCGTCCTGAAGAGCTTCCGGGGACTCAGGAACTCGATCGG AGCGCAGAGCAGCGATGTCGTGACCAATAAGTGGACTCGGCTGAACAATGCGGTCCTGGTTTTCGACCGGGAGCACCGGTTGCTCTACGAATTCATGGCG GAATTCGCTTCGACTTTCGACGGAAGCCGGTGGGGGCATAACGGGCCGTATCTCGTGTCGAGGGTAGTTGACAGATTTGCAGCCCGCGGTGGCGGTGGAG GCGGAAATTTCTCGATTCTGCCGCCACTAGCGTTCTATCCGGCGTACTGGAACAAGATCGGTGGGTACTTCAGGGCGCCTGGAACGAAGGCGGATTCGAG GTGGGTGAATGCTAAGCTACTACAGTTGAGCGGGAAGACATACGCGGTTCATCTGTGGAATAAGGAAAGCAGAGGTTTCAGGATCGAAGAAGGGAGCATC CTGTGGAGCTTGATTGCTCGCCATTGTATCATCTGCCAAGGGTTTTCATGA
AA sequence Show only first row Show all	>Lus10035526 pacid=23147351 polypeptide=Lus10035526 locus=Lus10035526.g ID=Lus10035526.BGIv1.0 annot-version=v1.0 MRKVIDRKPLVLFSLVLIIFIIRTSLIPTVVVVVPLQSSSSSPSLVTHKSSEETITRRRIESAEFHQEDGDGVVEQSYLVPPLNLTTQERIHWFRKNLPN FQILKSEDKLTSRFQNRMQEFVRGGRCGGEDDQLLFFMTWISPAGSFGQREFLAVETLFKSNPDGCLIILSKSLDSSKGRRILRPLLDRGYKGSAMSPDL NHLFRGTPAESWYDDLRRGEKDPGEISLAQNLSNLIRLAVLYKYGGVYLDTDVIVLKSFRGLRNSIGAQSSDVVTNKWTRLNNAVLVFDREHRLLYEFMA EFASTFDGSRWGHNGPYLVSRVVDRFAARGGGGGGNFSILPPLAFYPAYWNKIGGYFRAPGTKADSRWVNAKLLQLSGKTYAVHLWNKESRGFRIEEGSI LWSLIARHCIICQGFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10035526 [exp]	0	1
					Lus10010271 [exp]	4.1	0.8585
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10039507 [exp]	5.5	0.8455
					Lus10041755 [exp]	6.3	0.7854
					Lus10000890 [exp]	6.5	0.8017
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10042315 [exp]	6.7	0.7889
					Lus10012132 [exp]	6.9	0.8512
AT3G07840			Pectin lyase-like superfamily ...		Lus10011030 [exp]	8.7	0.8323
AT1G01490			Heavy metal transport/detoxifi...		Lus10024672 [exp]	9.7	0.7592
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10027514 [exp]	20.4	0.7812
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Lus10002576 [exp]	25.1	0.7640

Compare expression of checked genes

Lus10035526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.