Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027768 [exp] 326 / 3e-115 ND / Lus10007598 [exp] 145 / 6e-44 ND 42 / 2e-04 Lus10040145 [exp] 108 / 2e-29 ND 40 / 4e-04 Lus10000961 [exp] 105 / 3e-28 ND 39 / 5e-04 Lus10011019 [exp] 83 / 2e-18 AT4G17610 1595 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012800 [exp] 90 / 9e-23 ND / Potri.005G022200 [exp] 86 / 4e-21 ND / Potri.013G012733 [exp] 85 / 7e-21 ND / Potri.005G022250 [exp] 82 / 2e-19 ND / Potri.005G022400 [exp] 79 / 2e-18 ND / Potri.005G022300 [exp] 78 / 6e-18 ND / Potri.013G012766 [exp] 75 / 6e-17 ND / Potri.001G073350 [exp] 69 / 9e-15 ND / Potri.003G122000 [exp] 41 / 0.0001 AT5G64620 53 / 7e-09 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10035527 pacid=23147560 polypeptide=Lus10035527 locus=Lus10035527.g ID=Lus10035527.BGIv1.0 annot-version=v1.0 ATGAATTCCTCCATCACTGCCTCAATCATACTCTCATGCCTGATCACATTGCAACTTCTATTGTCTCAAGCAACCGCTCGACCAATCGCCGATCACGATC GCCACTGCCTGAATCAAATCAGACTACAGAAAGAAGTCTGCAACAGAACCTACGGCCTCGATTTCAACGTCTGCATCCGAACCTTGAGATCCGATCCCAA GGCGTCTACTGCCGACGACGTCAAGGCCCTCGCTGAGGCCGTCTTCAAGACCGCGAAGGAACAGTCGCTGAATATGAGCCGGACGTTCCAGCAAATCGGG AAACGCGACGGCGGAAGCGGCGCGGGGAAGTCGGCGATGAAGATGTGCGCGTACTACTACAAGGAGGCGGCGATCTTCTTCAGGCCGACGGGGCTGGGAG AGGTGACGAAGAGCCTCGAGTTGCATTCTGCGTTGGACGATTCGCACTACTGCGGCGCCGCGTTGGAGACGAAGAAGGTTCGGCTTGATCGGTCCGTGAA GGAGGAGATCCGGAAGTGGAAGAAGCTTTACGAGATTGCGTATGGGATTGTGCTGTACGCGGAGGATGTGTACGGCGGGACTGTTGGTTGA
AA sequence Show only first row Show all	>Lus10035527 pacid=23147560 polypeptide=Lus10035527 locus=Lus10035527.g ID=Lus10035527.BGIv1.0 annot-version=v1.0 MNSSITASIILSCLITLQLLLSQATARPIADHDRHCLNQIRLQKEVCNRTYGLDFNVCIRTLRSDPKASTADDVKALAEAVFKTAKEQSLNMSRTFQQIG KRDGGSGAGKSAMKMCAYYYKEAAIFFRPTGLGEVTKSLELHSALDDSHYCGAALETKKVRLDRSVKEEIRKWKKLYEIAYGIVLYAEDVYGGTVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24640		APPB1	Plant invertase/pectin methyle...		Lus10035527 [exp]	0	1
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Lus10036568 [exp]	8.1	0.9370
					Lus10025734 [exp]	13.6	0.9206
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042190 [exp]	54.8	0.8812
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	57.4	0.8879
					Lus10041164 [exp]	73.2	0.8860
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011830 [exp]	103.2	0.8734
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10042561 [exp]	128.6	0.8701
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	133.8	0.8589
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031810 [exp]	136.5	0.8687
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	161.4	0.8610

Compare expression of checked genes

Lus10035527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.