Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01260 146 / 1e-38 Carbohydrate-binding-like fold (.1.2) AT2G40070 78 / 1e-14 unknown protein AT3G09000 68 / 2e-11 proline-rich family protein (.1) AT5G26570 62 / 2e-09 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) AT1G27850 48 / 4e-05 unknown protein AT2G04270 45 / 0.0002 RNEE/G RNAse E/G-like (.1.2.3.4.5) AT2G38160 44 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027767 [exp] 868 / 0 AT2G40070 288 / 5e-86 unknown protein Lus10004826 [exp] 204 / 3e-56 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) Lus10002495 [exp] 201 / 1e-55 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10018226 [exp] 129 / 1e-31 AT5G01260 124 / 3e-32 Carbohydrate-binding-like fold (.1.2) Lus10002493 [exp] 123 / 2e-29 AT2G40070 300 / 2e-95 unknown protein Lus10004824 [exp] 120 / 2e-28 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10040188 [exp] 87 / 2e-17 AT2G40070 533 / 0.0 unknown protein Lus10030402 [exp] 82 / 1e-15 AT2G40070 561 / 0.0 unknown protein Lus10037838 [exp] 82 / 1e-15 AT2G40070 551 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G114500 [exp] 192 / 8e-53 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2) Potri.006G099200 [exp] 179 / 2e-48 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2) Potri.009G044800 [exp] 151 / 1e-39 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2) Potri.016G114900 [exp] 124 / 2e-29 AT2G40070 352 / 7e-114 unknown protein Potri.008G066900 [exp] 109 / 1e-24 AT2G40070 321 / 1e-102 unknown protein Potri.010G190300 [exp] 108 / 2e-24 AT2G40070 368 / 6e-121 unknown protein Potri.002G234500 [exp] 55 / 3e-07 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 51 / 5e-06 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.010G177000 [exp] 50 / 8e-06 AT2G40070 82 / 9e-17 unknown protein Potri.016G139500 [exp] 45 / 0.0003 AT3G08670 245 / 2e-73 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Lus10035528 pacid=23147464 polypeptide=Lus10035528 locus=Lus10035528.g ID=Lus10035528.BGIv1.0 annot-version=v1.0 ATGGAATCCCTTGGGAGGAATGCGTCTCCTTCTTCGTCGAGCATGATTGCTTTAACCAGCAGAACCGGAACCAAGCCACACAGTTTTCCATCTCTTAAGC AGTCGGTTATTAACATCACTACTGTGTTGCCGCATTGCTCCATACGCTTGAAGGATCACCGGTGGTGTTGTTGTTCGCCGATTTCAGCTTCTGCTTCTCT CTCTCAAGAGCCTGTCCAGGTGGACTTGGAAGAACCCATCTCTCAATCAGAAAACCAAGCACCAGACGAAACGGATACTGTTCGTGTGAGATTCCTACTG CAGAAAGAATGTTCATTTGGGGAGCAGTTTGTGTTGGTAGGAGATGATTCCTTGTTGGGTTCATGGGATCCTGATAGTGGGATACCATTGGACTGGTCAG ATGGACATCTTTGGGGCGTGGAACTAGATATGCCAGTTGGGAAAACAATCAAGTACAAGTTTATCCTCAAGGCCATTGATGGAGAGCTACTCTGGCAGCC TGACCCTGATCGAGTTCTCGAGACATGGCGAACTGCTACGAAGACTAGTATTGTTGTTCTTGAAGATTGGGCGGATCCTCAAGTTCAGAAGATTCTGGAG GAAGATGAAAAAATCGACCCGAGCTTCGTAGAGCAAACCAATGGGAGTGTTGTTGTGAAGGAAGATCCAGAGGCAGTTGCTGACTCCTGGTTGCTGTCTG TAGCTGATAACTTAGTTCAGATTGGAACGGTTTCGATGAATGCAATAACAAAAGGTTCTGATACTGATGTCGATGCCGATGCCGATGCTGATGCTATCCC AGTAGAGAAGCCAGTACTGTCTCTCATTGCAGATAACATCAGTTCCCACCAAGAGGAGATTATAACTAGTTATAATGCAAATGCAAGGCACCAACTTGTT GGAGAAAGTGTAATAATTAGTCAACCGAAGGAGGATCCTGATGTACTGCTTTCTCCAAACCATGGTACTGTCATGAATTCCACATCCATCGACATTGATG GAACTTCGATACCCGAGGAAGGTGGGTTATCTCCAGTTGCAAACACCCCAAGTGCAGCATCAGTTGAAGGAGTTACAGATGTTAAGAATCCAACTTTATT AGAGCAGCAGCGTCGGAGTTGTTGTATTGTGTTGAAACTCACGACGGAGGTTCGGAAGATGGTGACGATGGAGAAGGACGAAGAGCTGGCTCTGTTCCTG GAGCTCAGAAGGCGGGAGAAGGAGAAGAGGAGCAATTTTCTCGTCAGTAATACTAATCCGATTACGTCGGATGCGCACCTAGGAATTAGAGGCGGAGTTT CTGCAGCGACTCTGCTGGTGCCGCATCGTAAAACTGCGGCAGAAAGGTTCTTGGATTCCGAGAATGATAAATCTGAATTCGATTGGCTTATAACACCGCC GAGGACCCCAGTTTTCCCATCTGCGGAGATGGAGGCACAGAAGTCTCTGATGCATCAGCTTGGGAGGAATCCTTGTCCAACTGCACTGAGCTCAAGGCTG ACTAATATTCAGGCAGAGCCAGCATCTAGGGGGCCATCTAAACAATCAGGATTGAATTCATCCGTTAATGCTGGTAACAGGAGACCAGCAACTTCTGTAA GAACAAGACCTGCTTCTAGACCTTCAACACCTACGTCACGTCCCACTTTACCTTCACCTAGGCTGGGACGATCCTCCACTCCTACATCACGTCCCACATT GGCATCCACAAAGCCGGCAAGAGCATCAACTCCTACAAGAACTACCACTCAACGACCATCAACTCCCACAAGGGGTACTACTCCTCCTCAACGACCATCG ACACCTACAAGAACTACTACTGTTCAACGATCATCGACACCTACAAGAACCACTACTACTGCTCAACGATCATCGACACCGACGAGACCCTCTTTACCAT CATCAAGGTCATCATCAAGACCCTCGACTCCAACCCGCCGCTCCTCTGCTCCACTATCAAGTTCACAAATTATGTCTTCTGCACCTGGTAGTAGATCCTC CTCCGTGACAAGATCAGCTCCAGTTCAATCACGTGGGAGTTCCCCAACTCCAACAGCAGTGAGGCCGAGGGTGCCTTGGAATGTTGATGAAATGCCAGGG TTCTCGCATGAAGCTCCGCCAAATTTAAGGACTTCAATGCCTGAAAGGCCAGCTTCTGCTACCAGGGGCAGGCCTGGAGCTCGATCATCATCTTCTTCCA CTTCTAATGGAAGACCAAGGCAGCAGTCTTCCTCTCCTGCTAGGAGGAGATCAATTTCAACAGCTTCGAATGGGAATGCTGCTGCTGCACCAGTTGTTAG GATGCCTATTTCCATCAAGAGCATAAGCCAAATCATCGATCGTGACGAAATGAGAAAACTAGCACCCGCACCACCAAAGCTACATGATCGCCATCGCTCA TCTTCGTTGTCAATGTCGTCTTCCCTCGACAGCACAGGTTCTTCAAAATCACTGTCGAAGAAATCTCTTGACATGGCCCTGCGGCATATGGATATAAGAA GAAGCATTAACAGCAATCTAAGGCCGCTGATGACCAACGTACCGGCTTCGTCGATGTACAGTGTGAGATCAAGTACTGGAGGATCGACAAGAAGCTGGAC AGTTGGTTCAGGATCACCCCATGCCACGAGCAGTAACTGTAGTAGCTCGGAGCCGAGTGTCAACAACGCTTTCTTCGCAGATGAGAATGAGTTGAGTAGT AGCGAGAGAGGGAATTCATCTCCCACCAGTCAGGCCAGTAGGTGGTAA
AA sequence Show only first row Show all	>Lus10035528 pacid=23147464 polypeptide=Lus10035528 locus=Lus10035528.g ID=Lus10035528.BGIv1.0 annot-version=v1.0 MESLGRNASPSSSSMIALTSRTGTKPHSFPSLKQSVINITTVLPHCSIRLKDHRWCCCSPISASASLSQEPVQVDLEEPISQSENQAPDETDTVRVRFLL QKECSFGEQFVLVGDDSLLGSWDPDSGIPLDWSDGHLWGVELDMPVGKTIKYKFILKAIDGELLWQPDPDRVLETWRTATKTSIVVLEDWADPQVQKILE EDEKIDPSFVEQTNGSVVVKEDPEAVADSWLLSVADNLVQIGTVSMNAITKGSDTDVDADADADAIPVEKPVLSLIADNISSHQEEIITSYNANARHQLV GESVIISQPKEDPDVLLSPNHGTVMNSTSIDIDGTSIPEEGGLSPVANTPSAASVEGVTDVKNPTLLEQQRRSCCIVLKLTTEVRKMVTMEKDEELALFL ELRRREKEKRSNFLVSNTNPITSDAHLGIRGGVSAATLLVPHRKTAAERFLDSENDKSEFDWLITPPRTPVFPSAEMEAQKSLMHQLGRNPCPTALSSRL TNIQAEPASRGPSKQSGLNSSVNAGNRRPATSVRTRPASRPSTPTSRPTLPSPRLGRSSTPTSRPTLASTKPARASTPTRTTTQRPSTPTRGTTPPQRPS TPTRTTTVQRSSTPTRTTTTAQRSSTPTRPSLPSSRSSSRPSTPTRRSSAPLSSSQIMSSAPGSRSSSVTRSAPVQSRGSSPTPTAVRPRVPWNVDEMPG FSHEAPPNLRTSMPERPASATRGRPGARSSSSSTSNGRPRQQSSSPARRRSISTASNGNAAAAPVVRMPISIKSISQIIDRDEMRKLAPAPPKLHDRHRS SSLSMSSSLDSTGSSKSLSKKSLDMALRHMDIRRSINSNLRPLMTNVPASSMYSVRSSTGGSTRSWTVGSGSPHATSSNCSSSEPSVNNAFFADENELSS SERGNSSPTSQASRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40070			unknown protein		Lus10035528 [exp]	0	1
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	1.4	0.8571
AT4G03200			catalytics (.1.2)		Lus10002341 [exp]	4.9	0.8567
AT1G14030			Rubisco methyltransferase fami...		Lus10036780 [exp]	9.7	0.8745
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10025886 [exp]	19.8	0.8241
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10041602 [exp]	21.3	0.8566
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	24.0	0.8496
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10041313 [exp]	32.1	0.8150
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10043414 [exp]	35.3	0.7733
AT4G03220			Protein with RNI-like/FBD-like...		Lus10006970 [exp]	36.4	0.8096
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	38.6	0.8437

Compare expression of checked genes

Lus10035528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.