Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027765 [exp] 152 / 4e-42 AT5G48385 79 / 6e-15 FRIGIDA-like protein (.1) Lus10033829 [exp] 77 / 3e-17 ND / Lus10035523 [exp] 71 / 1e-15 ND / Lus10027766 [exp] 74 / 5e-15 AT5G01270 820 / 0.0 carboxyl-terminal domain (ctd) phosphatase-like 2 (.1), carboxyl-terminal domain (ctd) phosphatase-like 2 (.2) Lus10027773 [exp] 73 / 7e-15 ND 56 / 7e-08 Lus10033831 [exp] 42 / 0.0003 AT5G27220 153 / 2e-37 Frigida-like protein (.1) Lus10003566 [exp] 42 / 0.0003 ND / Lus10006522 [exp] 0 / 1 AT5G27230 59 / 4e-10 Frigida-like protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [flax] [poplar] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Lus10035529 pacid=23147383 polypeptide=Lus10035529 locus=Lus10035529.g ID=Lus10035529.BGIv1.0 annot-version=v1.0 ATGTCCAATGCTGAGCTTAAATTGAAGGAAGAGAAATTTCAGTTACTCTGTAAAGAGGTTGACATGAAGGAAACTGAATTGTGTGGTATCAAAGCTTCCA TTGAGGAAGGCCTCGAGGATTTGGATATGAAGAAGGAAGAAGTTCATGCAACCAGAAACTTGTGTGAGAAGCAACACGAAGAGATTTATTCGAACCAGAG AAACAAACAGCAACCTGAAATTGCAAAAGTTGGAGCCATTGGTTGTGATAGTAGCACCAGTCCTGCATTCGGTATTAGCTCTCATTTCAAAGCAGAGGAT ACACTTGAATTAGTTTCCATGATTGCTCACTGGGAAAGGGCCCCCGAGTTATGTCGCTCCCTTGATCTTGCCAAGTGCATACCAGCACCAGGCCTTGAAC ATCCATCTCGATTCCTTGAAAGCTTTATAGCAAGGTGTGGCCGGATTTGGGCACGATCCAGGTTACGTAATCAGGATGATCAGCCACCATCTCGAGGTTC TGGAAACTCAATTGGTAAAGAAAAGAAGTTCCTTGCTGGCGGCTGGTCTTGTTATAAAGAAACCGAATCTGAACATCCAGTATCTTGGCGGTACAATAGT TTCTGGGCACAACAAGTGGCCACAGCAGGCAACGATCTTGACCGGAGAAGAGCTGAGTAA
AA sequence Show only first row Show all	>Lus10035529 pacid=23147383 polypeptide=Lus10035529 locus=Lus10035529.g ID=Lus10035529.BGIv1.0 annot-version=v1.0 MSNAELKLKEEKFQLLCKEVDMKETELCGIKASIEEGLEDLDMKKEEVHATRNLCEKQHEEIYSNQRNKQQPEIAKVGAIGCDSSTSPAFGISSHFKAED TLELVSMIAHWERAPELCRSLDLAKCIPAPGLEHPSRFLESFIARCGRIWARSRLRNQDDQPPSRGSGNSIGKEKKFLAGGWSCYKETESEHPVSWRYNS FWAQQVATAGNDLDRRRAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10035529 [exp]	0	1
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	2.0	0.8465
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10013541 [exp]	3.5	0.8266
AT4G38380			MATE efflux family protein (.1...		Lus10020203 [exp]	3.6	0.8497
AT4G01190		ATPIPK10	phosphatidylinositol phosphate...		Lus10003028 [exp]	8.7	0.8364
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10014502 [exp]	11.6	0.8140
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	11.7	0.8200
AT5G46850			unknown protein		Lus10030954 [exp]	15.6	0.7415
AT5G65120			unknown protein		Lus10000581 [exp]	18.3	0.8127
AT2G40435			unknown protein		Lus10017415 [exp]	18.4	0.8190
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	18.7	0.8153

Compare expression of checked genes

Lus10035529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.