Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09580 507 / 5e-178 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027764 [exp] 814 / 0 AT3G09580 547 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10033264 [exp] 0 / 1 AT3G09580 87 / 6e-21 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344800 [exp] 568 / 0 AT3G09580 540 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10035530 pacid=23147376 polypeptide=Lus10035530 locus=Lus10035530.g ID=Lus10035530.BGIv1.0 annot-version=v1.0 ATGACTCTCCTCGTTTACCCAATCTCCATCTCCCACCGCCTTACCTCCTCCGGCAGCCGTCAAACCACCGGCATTTCAGTCTCCTGCTCTTCTTCCACCA ACATCAATCCCTCTCCCGCCACCAAAACAGGTGTCATCGTCGTCGGAGCCGGCCTCGCTGGTCTCGCCGCCGCAACCCACCTCCACTCGCGCAACATTCC CTTCCTCCTCCTCGAAGCATCCGACGCTGTCGGTGGCCGTGTTCGTACCGACCTCGTCGACGGCTTCCTCCTCGACCGAGGCTTCCAAATCTTCATCACC GCTTACCCGGAAGCCCGAAAGCTCCTCCACTACCCGGAATTGGATCTCTGCAAATTCTATTCAGGTGCCCGGGTTTACTTCGACGGCCGGTTCCACACCG TCGCCGATCCCCTCCGTCATTTCTCCGATTCCGTCCAGTCGTTGACTAACCCGATCGGGTCGGTTCTGGACAAGCTGCTTATCGGCTCCACCAGGCTGGG CGTTTTGACCAAATCGGAGGATCAAATATTCCGGTCAGACGAGATCCCTACATCGCAGCTCTTGAAGAGAATCGGATTCTCCGATTCTATCATAAGGAGA TTCTTTAAGCCCTTCTTCGGCGGGATATTCTTCGATCCGGAGCTGGAAACCACTTCCAGACTGTTCGAGTTCATCTTCAAATGTCTGGCTCTAGGCGAAA ATACCCTTCCGGCGAAGGGGATCGGAGCCATTCCTCGCCAATTGGCCTCGAAATTACCACCCGGTTCCATCCTATTGAACTCCAAAGTCGCCTCCATCAA TATCGAGGGATCATCCTTGAGGTTGGACAGCGGCGAGATTTTCCAGAGCGAACTTGGATTGATCTTGGCAGTGGATGAGCCTCAAGCGATGAATCTGCTG GCCAGAGAAAGGGAACCGGTTATTACGGTTCGACCTCCTCGTTGTACGGTTTGTGTATATTTCTCGGCCGATAACGGTTCGGTTCCGGTTGAAGAACCGG TTCTGTTTCTCAACGGTTCGGGTGAGGGCATTGTTAATAACATGTTCTTCGCCACCAATGTGGCTCCGTCGTATGCTCCTCCCGATAAGGTGTTGGTCTC CGTGTCGTTGATTGGGTTGTTCGAGGAGGAGGAGTCAGATGAGAAACTGGCGGGGCGGGTTGTTACGGAGCTTTCGGGTTGGTTCGGCGAGTCGGTGGTT GGGTCGTGGAAGTACTTGAGAACGTATCGGATAGGGTATGCACAACCCAATCAAAGCCCTCCAACTGATATGAGGAAACGCCACCGTATCGAGCCTGGTT TGTACGTTGCCGGAGATTACTTGACTTCAGCGACGTTTGACGGGGCGCTGCTTTCCGGGAGGAAAGCCGTTGAAGCATTGATTAGAGATGTATATAAGAG CTGA
AA sequence Show only first row Show all	>Lus10035530 pacid=23147376 polypeptide=Lus10035530 locus=Lus10035530.g ID=Lus10035530.BGIv1.0 annot-version=v1.0 MTLLVYPISISHRLTSSGSRQTTGISVSCSSSTNINPSPATKTGVIVVGAGLAGLAAATHLHSRNIPFLLLEASDAVGGRVRTDLVDGFLLDRGFQIFIT AYPEARKLLHYPELDLCKFYSGARVYFDGRFHTVADPLRHFSDSVQSLTNPIGSVLDKLLIGSTRLGVLTKSEDQIFRSDEIPTSQLLKRIGFSDSIIRR FFKPFFGGIFFDPELETTSRLFEFIFKCLALGENTLPAKGIGAIPRQLASKLPPGSILLNSKVASINIEGSSLRLDSGEIFQSELGLILAVDEPQAMNLL AREREPVITVRPPRCTVCVYFSADNGSVPVEEPVLFLNGSGEGIVNNMFFATNVAPSYAPPDKVLVSVSLIGLFEEEESDEKLAGRVVTELSGWFGESVV GSWKYLRTYRIGYAQPNQSPPTDMRKRHRIEPGLYVAGDYLTSATFDGALLSGRKAVEALIRDVYKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10035530 [exp]	0	1
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	2.2	0.9280
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	4.2	0.9211
AT2G33855			unknown protein		Lus10015404 [exp]	4.5	0.9129
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	4.7	0.9265
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	7.3	0.9055
AT1G19740			ATP-dependent protease La (LON...		Lus10006131 [exp]	9.6	0.9185
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10038297 [exp]	13.4	0.8800
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Lus10010555 [exp]	14.1	0.8812
AT5G52420			unknown protein		Lus10027495 [exp]	15.5	0.8945
AT1G05140			Peptidase M50 family protein (...		Lus10027190 [exp]	16.7	0.9043

Compare expression of checked genes

Lus10035530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.