Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38060 660 / 0 PHT4;2 phosphate transporter 4;2 (.1) AT3G46980 488 / 9e-169 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT4G00370 331 / 2e-107 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT2G29650 329 / 5e-107 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT5G20380 233 / 5e-70 PHT4;5 phosphate transporter 4;5 (.1) AT5G44370 191 / 5e-55 PHT4;6 phosphate transporter 4;6 (.1) AT4G25220 49 / 8e-06 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1) AT1G30560 44 / 0.0002 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027761 [exp] 767 / 0 AT2G38060 619 / 0.0 phosphate transporter 4;2 (.1) Lus10040703 [exp] 457 / 7e-157 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10018203 [exp] 462 / 9e-153 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10018218 [exp] 332 / 6e-108 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10040686 [exp] 333 / 3e-105 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10036366 [exp] 306 / 3e-97 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10014769 [exp] 227 / 6e-65 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10013836 [exp] 211 / 1e-62 AT5G44370 714 / 0.0 phosphate transporter 4;6 (.1) Lus10026551 [exp] 210 / 4e-62 AT5G44370 713 / 0.0 phosphate transporter 4;6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111000 [exp] 717 / 0 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.001G248200 [exp] 462 / 1e-158 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.001G249800 [exp] 339 / 8e-111 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.009G043800 [exp] 327 / 5e-106 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.014G085700 [exp] 325 / 7e-105 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.018G121600 [exp] 229 / 2e-68 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.006G062300 [exp] 226 / 2e-67 AT5G20380 636 / 0.0 phosphate transporter 4;5 (.1) Potri.009G168200 [exp] 182 / 6e-52 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1) Potri.002G160650 [exp] 77 / 2e-16 AT4G00370 190 / 3e-58 anion transporter 2, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10035532 pacid=23147665 polypeptide=Lus10035532 locus=Lus10035532.g ID=Lus10035532.BGIv1.0 annot-version=v1.0 ATGGCGGCAAAATCCCTCCCCCACTCTTCCTACTCACCAAACTCTTCATGTTTCTTGCGCTCCCTCCCTCCATTTCTTCCCACGAACAGAATCCATTTCA GATTAACCGATGGATTCCACCCGATTAAACAATTGGCTCGCACGACTACTCATTCTTCTCATAACGTTGTACGGAGCCAGGGAGGCGGAGGATTCTCGGT GCGGTGCACGGCGGAAGGGATTGAAAGAGGAATGTTCAATCTCGGCGGTGCTAGTGGAGGTGGTACTGGTAGAACCGCCGCTGCCGCCGCCGGAGTGGAA ACAAAGTTTCCGGAGAGGTTCACGGTGGTGGCTCTCACCGCTTTAGTGATGTGCCTCTGCAATGCTGATCGCGTCGTCATGTCCGTCGCCATCGTCCCCC TTGCTTCCAAGTACGGATGGTCCAGTGCCTTCCTTGGCATTGTACAGTCGTCGTTTCTATGGGGGTATATATTCTCGTCGCTGATTGGAGGAGCATTAGT GGACAAATATGGAGGGAAAAGGGTGTTAGCTTGGGGAGTTGGCTTATGGTCTTTCGCCACTGTTCTGACTCCATGGGCTGCTAACCATTCAACTCTCAGT CTTTTGGCAGTGAGAGCCTTCTTTGGTCTTGCTGAAGGTGTTGCTCTTCCCGCCACCACTACTCTTTTGTCAAGGTGGTTCCCAAGTAATGAACGTGCAA CTGCTGTGGGGATCTCAATGGCCGGATTTCATCTGGGGAATGTTGCAGGGTTACTGTTGACACCAATCATGTTGTCCACAGTTGGGATAGCTGGACCTTT TGTGTTGTTCTCTTCTCTCGGATTGGTTTGGGTAGCTACGTGGGCTGGTCGAGTGACGAATGATCCAAAGGATAGCCGGTTTGTGAGAAGATCGGAGTTG AAACTGATCCAAGCTGGTAAAACTGATTCCAGCAACGGTAGTAAGAGTAACCAGCTTCCTTCTCTTGGGCAGCTCTTGTCAAAGTTGCCCTCTTGGGCCA TCATACTTGCCAATGTAACCAACAATTGGGGATACTTCGTTCTTCTCTCGTGGATGCCTGTGTATTTCAAGACTGTGTTTAATGTGAACTTAAAGCAAGC AGCTTGGTTCAGTGCTGTTCCATGGGGGTCAATGGCAATCTCCGGTTACGTAGCAGGAGCAGCATCTGATTCGCTTATTAAAGCTGGGTATTCCTTGACA CTAGTAAGGAAAGTCATGCAGTCAATTGGTTTCATTGGACCTGGATTGGCACTTCTTGCCCTGAACTATGCCAAAACACCAGTCACTGCATCTATCTTCA TCACAGCAGCTCTAAGCTTGAGTTCTTTCAGCCAAGCTGGATTTCTCCTCAACATACAAGACATTGCTCCACGATGTGCAGGGTTTCTTCACGGAATCTG CAACTCAGCTGGGACATTGGCAGCAATAGTGAGTACAATCGGGACGGGGTATTTTGTAGAATGGCTAGGATCTTTCCAGGCGTTCTTGACGGTAACGGCA GGGCTATACTTTGCTACTGCTGTGTTCTACAATATTTATGCAACAGGGGACCAAGTTTTCTGA
AA sequence Show only first row Show all	>Lus10035532 pacid=23147665 polypeptide=Lus10035532 locus=Lus10035532.g ID=Lus10035532.BGIv1.0 annot-version=v1.0 MAAKSLPHSSYSPNSSCFLRSLPPFLPTNRIHFRLTDGFHPIKQLARTTTHSSHNVVRSQGGGGFSVRCTAEGIERGMFNLGGASGGGTGRTAAAAAGVE TKFPERFTVVALTALVMCLCNADRVVMSVAIVPLASKYGWSSAFLGIVQSSFLWGYIFSSLIGGALVDKYGGKRVLAWGVGLWSFATVLTPWAANHSTLS LLAVRAFFGLAEGVALPATTTLLSRWFPSNERATAVGISMAGFHLGNVAGLLLTPIMLSTVGIAGPFVLFSSLGLVWVATWAGRVTNDPKDSRFVRRSEL KLIQAGKTDSSNGSKSNQLPSLGQLLSKLPSWAIILANVTNNWGYFVLLSWMPVYFKTVFNVNLKQAAWFSAVPWGSMAISGYVAGAASDSLIKAGYSLT LVRKVMQSIGFIGPGLALLALNYAKTPVTASIFITAALSLSSFSQAGFLLNIQDIAPRCAGFLHGICNSAGTLAAIVSTIGTGYFVEWLGSFQAFLTVTA GLYFATAVFYNIYATGDQVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10035532 [exp]	0	1
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	4.8	0.9535
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10005670 [exp]	7.7	0.9444
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	11.4	0.9508
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	12.8	0.9210
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Lus10035843 [exp]	13.7	0.9399
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031142 [exp]	13.9	0.9499
AT1G48590			Calcium-dependent lipid-bindin...		Lus10042002 [exp]	14.9	0.8725
AT5G66120			3-dehydroquinate synthase, put...		Lus10041882 [exp]	16.6	0.9479
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	17.0	0.9486
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	17.0	0.9416

Compare expression of checked genes

Lus10035532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.