Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09090 1090 / 0 DEX1 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027760 [exp] 1688 / 0 AT3G09090 1160 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G096100 [exp] 1116 / 0 AT3G09090 1226 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3) Potri.016G110800 [exp] 1103 / 0 AT3G09090 1165 / 0.0 DEFECTIVE IN EXINE FORMATION 1, defective in exine formation protein (DEX1) (.1), defective in exine formation protein (DEX1) (.2), defective in exine formation protein (DEX1) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01839 [flax] [poplar] FG-GAP FG-GAP repeat
Representative CDS sequence Show only first row Show all	>Lus10035533 pacid=23147345 polypeptide=Lus10035533 locus=Lus10035533.g ID=Lus10035533.BGIv1.0 annot-version=v1.0 ATGGCAGACGGAAGTCAGCTCCAGCATTTATGCTACGCCATTGATTGCCGATATCAACAGGTATTAAGCAGCATACTTCTTGCTCTGAGTATGTTATCTT GGATTGGCGTCTTTGAGATTACTAGGGCTCAATTCCTTGCATTCTGCAGCGATGGGAAGCTAGACATTGTTGTTCCTTCTTTTCTGCACTACCTAGAAGT TCTTGAAGGCTCGGATGGGGACAAAATGCCTGGTAAGTTTGGGAGGTGTTTGAGTTTTTGCATCACAACATTTTGGAAATTGTGGGACTGGATCAATAAC ATATATCGAAATGTTCCATCAGGCTGGCCAGCATTCCACCAGTCTACGGTTCATGCCAGCCCTCTCCTATATGACATCGACAAAGATGGTGTCAGAGAGA TCGCTTTGGCCACATACAATGGGGTTGTGCAATTTTTTAGGGTTTCAGGCTACATGATGACGGATAAACTAGAGATACCTCGTAGAAGAGTTAAAAAAGA TTGGTATGTTGGCCTGAAGAAGGATCCTGTGGATCGTTCCCACCCTGATGTCCATGATGATGAGCTTATCAAGGAGGCTGCTGCTGCTGATGAGAAGAAT ACTATGCCCCAAACAACTGGAGGTACCGCCAGAACACTTGATTCAACCACTCCACTTTCTAAATCAGTGGAAAACCACCCTCCAGGAAATGGAAGTGTAA CTGGTGAAAATAACACGGTTATTGGTTCGGTGGTTGATAAACCTAAACGTGATGGCAATGCTCATGTTGAAGCAAATAGCACACTGTCTACATCAGCTCA AGATACCCCTCCTGCAGAGGAGAGTACATCACATACAAATAATACAGTTAAGAACGACCTTCCTGCTAATGCATCCAATCAGGAGAATAAACCTAAAATG AACGAGAGTGAAACAGTCATCAAACTGCCCACAAGCTCAGACAATAATGGGAATGCTGAAGCTACAAAAACTGGTGAAACACATAATGCAACAAACGCTG GACGACATCTCCTGGAAGATAATGATTCGAAGGTTTCAGAATTAGATAATGAAAAGAGCTCCGGTGATGATCATGTGGCAACTGTGGAGAATGATGAGGG GTTGGAAGCTGATGCTGATTCATCATTTGAGTTGTTTCGTGAAACTGATGAGCTAGCTGATGAATATAGTTATGACTACGATGATTATGTTGATGAATCA ATGTGGGGAGATGAGGAGTGGAATGAAGGACAACATGAGAAACTTGAAGACTATGTCAATGTTGATGCCCATATCTTGTCCACTCCTATTATAGCAGACA TTGATAAAGATGGCGTGTCAGAGATGATAGTTGCAGTATCGTACTTCTTTGATCACGAGTACTATGACAACCCAGAACATTTGAAAGAACTCGGTGGTAT TGACATTGACAAGTATGTTGCTGGCTCGATCGTGGTCTTTAATCTTGATACGAAGCAAATTAAGTGGACAAGAGAACTAGATTTAAGTACAGACACTGAA AACTTCCGTGCATTTATATATTCTACTCCAACGGTAGCTGACCTGGATGGTGATGGCTATATGGACATCCTTGTCGGGACTTCATATGGGTTGTTTTATG TTCTCGATCACCGCGGCAACATCAGAGAAAAGTTTCCCCTTGAAATGGCTGAAATCCAAGGAGGTGTAGTTGCTGCTGATATAAATGATGATGGTAAACT TGAACTAGTGACTACTGACACTCATGGAAACGTTGCTGCATGGACTACACAAGGAGTGGAAATTTGGGAGACTCATCTCAAGAGCCTTGTTTCCCAGCAA CCATCTGTGGGCGATGTTGATGGTGATGGGCATACTGATGTGGTTGTTCCAACATTGTCGGGGAACATATATGTTCTCAGTGGCAAAGATGGCTCAATGG TCCGGCCTTATCCATACAGAACTCATGGAAGAGTGACTAGCCAAGTTCTTCTTATCGATCTGAGTAAGCGGGGAGAGAAAAGCAAAGGGCTTAGTCTAGT GACCTCATCATTTGATGGCTACTTGTATCTCATAGATGGACCTAGCTCCTGTGCTGATGTTGTCGACATCGGTGAAACTTCGTACAGCATGGTTCTGGCT GATAACGTGGACGGTGGAGATGATCTGGACCTGATTGTCACGACAATGAACGGGAATGTCTTCTGCTTCTCCACCCCATCTCCGCATCATCCCCTCAAGG CCTGGAGATCACCTAATCAAGGACGAAACAATGTTGCGAATCGCTACAATCGTGAAGGGGTCTACGTCACCCATCCTTCAAGAGCATTCCGGGACGAAGA AGGAAAGAACTTCTGGGTAGAGTTCGAGATTGTAGACAAACACAGGTTCCCCTCTGGGTCTCAAGCACCCTACAACGTCACTACAACCCTGTTAGTACCC GGAAACTACCAAGGCGACCGGAGGATAACACACTCGCAAATCTACGACCAGCCTGGGAAATACAAGACAAAGCTTCCGACAGTTGGAGTTAGGACGACTG GAACCGTTATGGTCGAAATGGTGGACAAGAACGGTCTATATTTCTCCGACGACTTCTCCCTTACGTTCCACATGTACTACTACAGACTGCTCAAGTGGCT CATCGTCCTCCCGATGCTTGGCATGTTCGGGATACTAGTGATCCTTCGCCCGCAGGAAGCTGTGCCTCTGCCGTCTTTCTCGAGAAACACCAATCTATAA
AA sequence Show only first row Show all	>Lus10035533 pacid=23147345 polypeptide=Lus10035533 locus=Lus10035533.g ID=Lus10035533.BGIv1.0 annot-version=v1.0 MADGSQLQHLCYAIDCRYQQVLSSILLALSMLSWIGVFEITRAQFLAFCSDGKLDIVVPSFLHYLEVLEGSDGDKMPGKFGRCLSFCITTFWKLWDWINN IYRNVPSGWPAFHQSTVHASPLLYDIDKDGVREIALATYNGVVQFFRVSGYMMTDKLEIPRRRVKKDWYVGLKKDPVDRSHPDVHDDELIKEAAAADEKN TMPQTTGGTARTLDSTTPLSKSVENHPPGNGSVTGENNTVIGSVVDKPKRDGNAHVEANSTLSTSAQDTPPAEESTSHTNNTVKNDLPANASNQENKPKM NESETVIKLPTSSDNNGNAEATKTGETHNATNAGRHLLEDNDSKVSELDNEKSSGDDHVATVENDEGLEADADSSFELFRETDELADEYSYDYDDYVDES MWGDEEWNEGQHEKLEDYVNVDAHILSTPIIADIDKDGVSEMIVAVSYFFDHEYYDNPEHLKELGGIDIDKYVAGSIVVFNLDTKQIKWTRELDLSTDTE NFRAFIYSTPTVADLDGDGYMDILVGTSYGLFYVLDHRGNIREKFPLEMAEIQGGVVAADINDDGKLELVTTDTHGNVAAWTTQGVEIWETHLKSLVSQQ PSVGDVDGDGHTDVVVPTLSGNIYVLSGKDGSMVRPYPYRTHGRVTSQVLLIDLSKRGEKSKGLSLVTSSFDGYLYLIDGPSSCADVVDIGETSYSMVLA DNVDGGDDLDLIVTTMNGNVFCFSTPSPHHPLKAWRSPNQGRNNVANRYNREGVYVTHPSRAFRDEEGKNFWVEFEIVDKHRFPSGSQAPYNVTTTLLVP GNYQGDRRITHSQIYDQPGKYKTKLPTVGVRTTGTVMVEMVDKNGLYFSDDFSLTFHMYYYRLLKWLIVLPMLGMFGILVILRPQEAVPLPSFSRNTNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10035533 [exp]	0	1
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10005982 [exp]	3.5	0.9113
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	4.1	0.9133
AT5G08500			Transmembrane CLPTM1 family pr...		Lus10019695 [exp]	5.1	0.8885
AT4G01810			Sec23/Sec24 protein transport ...		Lus10007190 [exp]	6.0	0.8850
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	6.0	0.9079
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	14.2	0.8709
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	14.4	0.9048
					Lus10013986 [exp]	16.7	0.8552
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	16.9	0.9013
AT1G79570			Protein kinase superfamily pro...		Lus10031173 [exp]	17.5	0.8927

Compare expression of checked genes

Lus10035533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.