Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09100 769 / 0 mRNA capping enzyme family protein (.1.2) AT5G01290 710 / 0 mRNA capping enzyme family protein (.1) AT5G28210 534 / 0 mRNA capping enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027759 [exp] 910 / 0 AT3G09100 795 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10040496 [exp] 213 / 6e-62 AT5G28210 261 / 1e-82 mRNA capping enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110700 [exp] 869 / 0 AT3G09100 914 / 0.0 mRNA capping enzyme family protein (.1.2) Potri.006G096000 [exp] 860 / 0 AT3G09100 948 / 0.0 mRNA capping enzyme family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF03919 [flax] [poplar] mRNA_cap_C mRNA capping enzyme, C-terminal domain CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain CL0078 [flax] [poplar] DNA_ligase PF01331 [flax] [poplar] mRNA_cap_enzyme mRNA capping enzyme, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10035534 pacid=23147441 polypeptide=Lus10035534 locus=Lus10035534.g ID=Lus10035534.BGIv1.0 annot-version=v1.0 ATGGTTGTTGCGATGGACTTGAACGCCTCGCCTCTGCCTGAAGACGAGGAGGATAATTTCGAAAGACACGTTGAAGAATATAGTGCCAATCACGAGGAAC GCGGAGAGACTTCTGTACAGCTTGCACGACGGGAGCGGGACGAGAGGCGCAAGCGTTTGAAAATTGATAATTCAGAAGACAGACCCTCTTCTGTACCTCG GCAGGCAGTTCATGATCAGAATTATCAATCTAAATACCAGAAGTCATATGATAAAAGCAGACTACCTCCTGGATGGTTGGATTGCCCCCCTGCTGGTAAT GAGATCTGTGGAATTGTTCCTTCTAAGGTTCCACTTGGTGAAATGTTCTACGAGGATGTTCCACCTGGTAAAAGATATTCTTTCAAGCAAGTGATTCATA ATCAAAGAGTCTCAGGAAGAAAACTTGGTTTGGTGATCGATTTGACAAATACTACTCGTTACTACTCAACCAATGAGTTTAAAAAGGAGGGCATCAAGCA TATTAAGGTGCATGGTGATCTGCAATGGCCTCTGAGTTATGCTTATTCCAGCTATGCTATGCATTGTAGTACTTGTTCACTATCAACTCAAACAGACTCT GTTGTTACTTGTCCAGATTCAATGCCGGGGACGGGATGCTGTACCAGAGAACGTGGCTGTAAATCAGTCATGCAGTTTCTCTCGCTTCAGAAAATTTCTA AGAAGTATATTCTTGTTCATTGCACTCACGGGCACAACCGCACAGGATACATGATCGTTCATTTTTTGATGCGTACACAGTTGATGTCTGTCACAGAGGC AATAACTAAATTTGCTGAAGTACGTCCACCTGGGATCTACAAACCAGACTATATTGATGCTCTGTACACTTTCTACCATGAAAAGAGGCAGGACATTTGC CCTCCAATTCCAGAGTGGAAGAGATCTTCTGAATTTGATCTTAATGGCAAAGCAGTACCTGATGACGAAGATGACGGCGCTTTAGCCGTGCCTTTGACTA ACAATCAAGAGATGGATGTCAAGCTGACAAATGATGATGTTTTGGGGGATGACATACCAATTGACCAGCTCAACACATTGAGACAGATCTGTTATCAAAT GCTAAAAATGCATATGGGAGGCAAAACATTCCCCGGTTCACACCCAGTATCTTTGAGCAGGGATAATTTACAGAAATTGAGGCAGCGTTATTATTATGCT ACCTGGAAAGCTGATGGTACGCGATATATGATGCTAATCACAATGGATGGGTGTTATCTGATCGATAGGAGTTTCAACTTTCGAAGGGTCCAGATGAAGT TTCCTTGCAGGATTGGTAGTGATGTTTCGTTCGACAGGACGCATCATTTTACCTTGCTTGATGGGGAGATGATTATTGATATTGTGCCAGAAACCCAGAA GCAAGCGAGACGCTACCTCATCTATGATGTGATGGCAATCAACAATGTGTCTGTCGTAGAGCGGCCTTTCAGTGAGCGATCAAAAATGATTGAGAAAGAA GTCATTGAACCTCGAAACTATGAACGTGCACATATCACTCAGAGCAAGAATCCCTGCTATGATTATTCTTTGGAACCCTTCAGCGTTAGAAAGAAGGGTT TCTGGCCACTTTCTGCCGTTAAGAAGCTTTTGAAGGACTTCATCCCTACGCTTTCACACGAGGCAGATGGACTTATTTTTCAGGGATGGGACGATCCTTA CGTCCCAAGGACTCACGATGGTCTTTTGAAGTGGAAGTACCCGGAGATGAACTCCGTTGACTTCTTGTTTGAGGTTGGTGCTGATGGTCGGGAGTCATTG TATCTAAATAGTGGTGGGAAGAAGAGACTACTGGAGAGGAGCTCGGTGGTATTCAGAGATGGTTCGGACCCATCCTCTTATTCCGGGAAGATCATAGAGT GCTCGTATAATTCCGAGGACCAGGTTTGGGAATGCATGCGGATCCGCGTTGATAAGAACGCTCCAAACGAGTTCAATACCTTCAAGAAGGTATTATTTCG TCTTGATAAGCCTTCACCCTACGATGTTTGCCCTTATGTCATATTAGAAGCACCACATTTTTGCTTTACCAGGTGA
AA sequence Show only first row Show all	>Lus10035534 pacid=23147441 polypeptide=Lus10035534 locus=Lus10035534.g ID=Lus10035534.BGIv1.0 annot-version=v1.0 MVVAMDLNASPLPEDEEDNFERHVEEYSANHEERGETSVQLARRERDERRKRLKIDNSEDRPSSVPRQAVHDQNYQSKYQKSYDKSRLPPGWLDCPPAGN EICGIVPSKVPLGEMFYEDVPPGKRYSFKQVIHNQRVSGRKLGLVIDLTNTTRYYSTNEFKKEGIKHIKVHGDLQWPLSYAYSSYAMHCSTCSLSTQTDS VVTCPDSMPGTGCCTRERGCKSVMQFLSLQKISKKYILVHCTHGHNRTGYMIVHFLMRTQLMSVTEAITKFAEVRPPGIYKPDYIDALYTFYHEKRQDIC PPIPEWKRSSEFDLNGKAVPDDEDDGALAVPLTNNQEMDVKLTNDDVLGDDIPIDQLNTLRQICYQMLKMHMGGKTFPGSHPVSLSRDNLQKLRQRYYYA TWKADGTRYMMLITMDGCYLIDRSFNFRRVQMKFPCRIGSDVSFDRTHHFTLLDGEMIIDIVPETQKQARRYLIYDVMAINNVSVVERPFSERSKMIEKE VIEPRNYERAHITQSKNPCYDYSLEPFSVRKKGFWPLSAVKKLLKDFIPTLSHEADGLIFQGWDDPYVPRTHDGLLKWKYPEMNSVDFLFEVGADGRESL YLNSGGKKRLLERSSVVFRDGSDPSSYSGKIIECSYNSEDQVWECMRIRVDKNAPNEFNTFKKVLFRLDKPSPYDVCPYVILEAPHFCFTR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	0	1
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	1.0	0.9055
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	2.4	0.9052
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	3.5	0.8967
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	3.9	0.8985
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10023169 [exp]	3.9	0.8719
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	4.0	0.8998
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	5.7	0.8868
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	6.2	0.9023
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	7.5	0.8914
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	8.1	0.8827

Compare expression of checked genes

Lus10035534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.