Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54130 315 / 3e-108 Josephin family protein (.1) AT2G29640 53 / 8e-08 JOSL JOSEPHIN-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027757 [exp] 539 / 0 AT3G54130 333 / 4e-115 Josephin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110300 [exp] 397 / 4e-140 AT3G54130 347 / 8e-121 Josephin family protein (.1) Potri.006G095700 [exp] 344 / 4e-120 AT3G54130 321 / 1e-111 Josephin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02099 [flax] [poplar] Josephin Josephin
Representative CDS sequence Show only first row Show all	>Lus10035536 pacid=23147410 polypeptide=Lus10035536 locus=Lus10035536.g ID=Lus10035536.BGIv1.0 annot-version=v1.0 ATGGACGGAGCCAGCAATGGAGGGATGCTGTACCACGAGGTGCAGGAGTCGAAGCTCTGCGCCGTTCATTGCGTCAACACCGTCCTTCAGGGCCCTTTCT TCTCGGAATTCGATTTGGCCGCCCTTGCCTCTGATCTCGACACCAGGGAACGCCAGGTCATGTCCCAGCGAGCTCCTCCTTCTCCTGCCGCTGCCGGTGG AGGCGATTTCCTCTCCGTGGAGTCTCACAATGTCTCCATGGGCGGCGATTTCAGCATCCAGGTTTTGCAGAAGGCCTTAGAGGTATGGGATTGGCAAGTG ATTCAATTCAGCAGTCCACTGGGCGAGCCAGCACAGGTGGACCCAGATACTGAAAACGCATTCATATGTCACCTTCACGACCACTGGTTCTGCATCAGGA AAGTGAATGGGGAATGGTACAACTTCGACAGTCTCTCTGCTGCACCGACTCACCTCTCAAAGTTCTACCTCGCAGCTTACCTGGACTCCCTGAGAAGCGC TAGCTGGAGCATATTCATAGTGAGGGGAAACTTCCCAGCCGAGTTCCCCATCTCGTCTTCTGAATCTTCCAACGGTTATGGCCAGTGGCTATCCCCTGAG GACGCCAATAGGATCATTAAGTCCTGCTCTGGCAGCAGGGAACCGACGCCCATCACCTTCATCCCACCGGTTAACGATCCATATCAAGATATGTTGTCGT ATGGGGATGACGAGGATTTGAAAGCCGCGATTGCTGCCAGCTTGATGGATTCGTCGCAATCTTCTACCAGTAACAAGGAACCGGAGAGCAAAGAGACATC AGCAGTTATCTCTGAGAAGGATAAGGAACAAGAGAATAAAGAGGCAGCAGCTGACGCCTCGAAGGACGAGGAATCGAAGAACACGAATGAACAGCCAATT ACAGACGAATGA
AA sequence Show only first row Show all	>Lus10035536 pacid=23147410 polypeptide=Lus10035536 locus=Lus10035536.g ID=Lus10035536.BGIv1.0 annot-version=v1.0 MDGASNGGMLYHEVQESKLCAVHCVNTVLQGPFFSEFDLAALASDLDTRERQVMSQRAPPSPAAAGGGDFLSVESHNVSMGGDFSIQVLQKALEVWDWQV IQFSSPLGEPAQVDPDTENAFICHLHDHWFCIRKVNGEWYNFDSLSAAPTHLSKFYLAAYLDSLRSASWSIFIVRGNFPAEFPISSSESSNGYGQWLSPE DANRIIKSCSGSREPTPITFIPPVNDPYQDMLSYGDDEDLKAAIAASLMDSSQSSTSNKEPESKETSAVISEKDKEQENKEAAADASKDEESKNTNEQPI TDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54130			Josephin family protein (.1)		Lus10035536 [exp]	0	1
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	5.7	0.9363
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	7.9	0.9354
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10005460 [exp]	9.5	0.9325
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	10.6	0.9228
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	11.5	0.9335
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	13.0	0.9337
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	13.2	0.9288
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	14.1	0.9281
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	17.0	0.9248
AT2G32235			unknown protein		Lus10013126 [exp]	17.7	0.9235

Compare expression of checked genes

Lus10035536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.