Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54110 488 / 1e-175 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT5G58970 424 / 1e-150 ATUCP2 uncoupling protein 2 (.1.2) AT4G24570 194 / 7e-60 DIC2 dicarboxylate carrier 2 (.1) AT2G22500 189 / 4e-58 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT1G14140 176 / 3e-53 Mitochondrial substrate carrier family protein (.1) AT5G09470 167 / 2e-49 DIC3 dicarboxylate carrier 3 (.1) AT4G03115 158 / 4e-46 Mitochondrial substrate carrier family protein (.1) AT5G19760 132 / 2e-36 Mitochondrial substrate carrier family protein (.1) AT3G21390 96 / 1e-22 Mitochondrial substrate carrier family protein (.1) AT5G61810 95 / 3e-22 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027755 [exp] 588 / 0 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10021123 [exp] 522 / 0 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10017187 [exp] 503 / 0 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 425 / 7e-151 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10016445 [exp] 410 / 9e-145 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10030443 [exp] 179 / 2e-54 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 145 / 3e-41 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10007883 [exp] 143 / 2e-39 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 137 / 2e-38 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095500 [exp] 528 / 0 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.016G110100 [exp] 506 / 0 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.001G247800 [exp] 442 / 1e-157 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.017G045100 [exp] 204 / 6e-64 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 204 / 6e-64 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.017G045150 [exp] 204 / 8e-64 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.007G113000 [exp] 192 / 4e-59 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.002G104400 [exp] 185 / 2e-56 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.005G157300 [exp] 184 / 4e-56 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045332 [exp] 177 / 4e-53 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10035538 pacid=23147593 polypeptide=Lus10035538 locus=Lus10035538.g ID=Lus10035538.BGIv1.0 annot-version=v1.0 ATGGTTGGCCACGGCGGCGGTAAATCGGACATCTCCTTTCCCGGCACTTTAGCCAGTGGCGCCTTCGCCGCTTGCTTGGCCGAGATTTGTACGATCCCGC TGGACACAGCGAAAGTGAGACTTCAGCTTCAGAAGTCAGCCGTCGCTGGAGATGTATTGACCATGCCTAGATATAACGGTATGTTGGGCACTGTCGCTAC CATTGCTAGGGAAGAAGGAGCTGCTTCGCTCTGGAAAGGCATAATTCCTGGACTCCATCGGCAGTGTTTGTATGGTGGCTTAAGGATAGGTTTATACGAC CCTGTTAAGAACTTCTATTGTGGCCCTGACTTTGTTGGAGATGTTCCTTTGTCTAAGAAAATTCTAGCTGCTCTAACCACCGGCGCTGTAGGGATCTCGA TTGCCAATCCAACCGATCTTGTGAAAGTACGATTGCAGTCTGAGGGGAAGTTACCTCCTGGAGTGCCAAGACGCTATTCTGGAGCTCTAAATGCTTATTC TACGATAGTGAGACAGGAAGGAATAGGTGCCCTTTGGACTGGGGTTAGCCCGAATATTGCACGAAATGCTATTATAAATGCCGCGGAACTAGCCAGTTAT GATCAAGTGAAGGAGACATTACTGAGAATTCCAGGTTTTAAAGACAATGTTGTGACTCATCTCCTAGCCGGTCTCGGGGCAGGCTTTTTCGCTGTCTGTA TTGGTTCTCCAGTAGATGTGGTTAAGTCCAGAATGATGGGGGACTCAGCATACAAGAGTACAATTAACTGTTATGTCAAGACTTTGAAGAATGACGGACC TCTTGCTTTCTACAAAGGGTTTATCCCGAATTTCGGCCGCCTGGGATCTTGGAACGTGATCATGTTCTTAACCTTGGAACAGGCTAAGAAGTTTGTAAAA AGCCTGGAATCACCGTCATCTTGA
AA sequence Show only first row Show all	>Lus10035538 pacid=23147593 polypeptide=Lus10035538 locus=Lus10035538.g ID=Lus10035538.BGIv1.0 annot-version=v1.0 MVGHGGGKSDISFPGTLASGAFAACLAEICTIPLDTAKVRLQLQKSAVAGDVLTMPRYNGMLGTVATIAREEGAASLWKGIIPGLHRQCLYGGLRIGLYD PVKNFYCGPDFVGDVPLSKKILAALTTGAVGISIANPTDLVKVRLQSEGKLPPGVPRRYSGALNAYSTIVRQEGIGALWTGVSPNIARNAIINAAELASY DQVKETLLRIPGFKDNVVTHLLAGLGAGFFAVCIGSPVDVVKSRMMGDSAYKSTINCYVKTLKNDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQAKKFVK SLESPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10035538 [exp]	0	1
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10027755 [exp]	1.0	0.9503
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Lus10012290 [exp]	6.5	0.9110
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Lus10030070 [exp]	10.0	0.9390
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10003665 [exp]	11.7	0.9470
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10019299 [exp]	13.6	0.9383
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	14.1	0.9377
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	14.2	0.9366
AT3G30390			Transmembrane amino acid trans...		Lus10036845 [exp]	14.8	0.9396
AT1G44790			ChaC-like family protein (.1)		Lus10003737 [exp]	17.9	0.9142
AT3G54570			Plant calmodulin-binding prote...		Lus10024175 [exp]	19.4	0.8709

Compare expression of checked genes

Lus10035538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.