Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37980 747 / 0 O-fucosyltransferase family protein (.1) AT3G54100 736 / 0 O-fucosyltransferase family protein (.1) AT5G01100 640 / 0 O-fucosyltransferase family protein (.1) AT5G35570 578 / 0 O-fucosyltransferase family protein (.1) AT1G14020 405 / 7e-135 O-fucosyltransferase family protein (.1) AT5G15740 405 / 1e-134 RRT1 O-fucosyltransferase family protein (.1) AT1G22460 402 / 7e-133 O-fucosyltransferase family protein (.1) AT3G02250 395 / 5e-131 O-fucosyltransferase family protein (.1) AT5G64600 392 / 2e-129 O-fucosyltransferase family protein (.1) AT2G03280 388 / 1e-128 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027753 [exp] 1097 / 0 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 1000 / 0 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 985 / 0 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10017171 [exp] 593 / 0 AT5G35570 828 / 0.0 O-fucosyltransferase family protein (.1) Lus10021557 [exp] 587 / 0 AT5G35570 807 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 564 / 0 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 557 / 0 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 422 / 3e-141 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 405 / 6e-135 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G109700 [exp] 772 / 0 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 761 / 0 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 589 / 0 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 421 / 1e-140 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 416 / 9e-139 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 409 / 2e-136 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 408 / 4e-136 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 407 / 7e-136 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 402 / 3e-133 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 400 / 7e-133 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10035540 pacid=23147623 polypeptide=Lus10035540 locus=Lus10035540.g ID=Lus10035540.BGIv1.0 annot-version=v1.0 ATGGCAATGTCGTCGTCGTCCGGCGGTAACGCAGCAGCAACCAATGTCAGCCCCCACAACAACCACCCGGGCCCCAAAGCCACCCGCCGCAGAGTTGACG CCGCCTCCGATTCCCACTCCGAAGCCGACGAATCCGCCGCCGGAGGATGCAACGCCGCCTGCGCCGCTGTCGCGAGCAACAACATCAACAGCATCAGCAA TGCTGGTTGTCACCACCGCAACTGCCAGCGCCATCCGGTGATCAAGTACCTCCTCCTCCGGCGGAAGCTATTCTTCTTCCTCCCCGAGGTTCTCCTCATC GGAGTAGAGGAAGGCTGCCAGGGCGCGGCGGCGATGGCGCAGGGTTTGACATTTGGGAAGTGCCTAGGGCGGAGGATTATCGGCGCGTTGATGTTCATGA CTGTGGTTTCGGTGTTCGTTAAGATTTTCTTGCTGAGTCATCATCATCATCATAACAATCACATTGACAGCCTCCTGGAGAACAACATCAATGGCGGAGA CGGCGGCGGAGGTGGTGGCGGAGGAAAGGAGATGAACGGGCTGTTGATTCTTCAGACTTTCAAAGACGATTGGGCTATGGCTCAGCGCGTCCTCTCCGAA ACGCAATCCTCCATCCCCAAACGCCTCCTCGAGAAGTTTCCGACGCCAGAAATTTGGATGAAGCCAAACAATGACAACTTCTATAAGTGCATAACACGGC CGAGAAACCCATTATTAAGGTCAAGGAAAACAAATGGGTACCTACTTGTTCACGCAAATGGTGGACTGAATCAGATGAGAACAGGGATTTGTGACATGGT TGCTGTTGCTAAACTGATGAATGCAACTCTGGTTCTTCCTTCTCTCGATCACGAATCGTTCTGGACCGATCCCAGTACGTTTAAGGACATTTTCGACTGG AAACACTTCATGAAAGTGTTGAGAGATGATGTGGACATAGTTGAGTATTTGCCACCCCATTTTGCAAAGAAGAAGCCTCTTGTCAAGGCTCCAATCTCTT GGTCCAAGGCTAGCTACTACAGAGGAGAGGCAGTGCTGTTGAAGAAGCACAAAGTCATGAAGTACACACACACAGACTCCAGACTAGCCAACAATGGCCT TTCTGCTTCGATCCAGAAGCTCCGGTGTCGAGCCAATTACGAAGCTCTCCGCTACTCCCAAGATATCGAGGATCTCGGCAAGACATTGGTCGCTCGGCTC AGGAAGACCGACGGGCCTTACGTTGCCCTGCACCTAAGATATGAGAAAGATATGCTGTCTTTCACCGGCTGCAACCACAACCTAACTGCAGAGGAAGCTG AGGAGCTGAGGATAATGAGGTACAGTGTTCCTCACTGGAAGGAGAAGCAGATAGATAGCGAAGCTCGAAGACAGGAAGGAGGATGCCCCATGTCTCCGAG AGAAGCCGCCATGTTCCTCAAGGCTATGGGGTATCCTGGATCTACGACTGTTTACATAGTTGCTGGACCGATCTACGGGAGCAATAGCATGGCCGAATTT CAAGAGGAATATCCGAATGTGTTCACTCATTCCACTTTGGCAACTGAAGAAGAGCTGGAACCTTTCAAGCCTTATCAGAACCGTTTAGCAGCTCTGGATT ACATTGTTGCTCTTGAGAGTGATGTCTTTGTTTACACTTACGATGGGAATATGGCGAAGGCGGTTCAGGGTCATCGGAGGTTTGAAGGTTTTCGAAAGAC TATCAATCCAAATAGGCAGAATTTTGTGGCGCTGATTGATCAGTTGAACGAGGGATCGCTTTCGTTTGATGATTTTGCTTCAAAGGTCAGAACTTTGCAT GAGCACAGGCTTGGACAGCCTTATAACAGACGGCTAGGTGAATCGCCGAGGCTGGAAGAGAACTTCTACGCGAACCCTCTTCCGGGATGTTTGTGTAACC GAACTCAGGAGCGAATGAGCACCTTGGCAGCGATCGAGAGGAGGCAAAAGAATGTTGGGACCGCATCTGGGAGGTGA
AA sequence Show only first row Show all	>Lus10035540 pacid=23147623 polypeptide=Lus10035540 locus=Lus10035540.g ID=Lus10035540.BGIv1.0 annot-version=v1.0 MAMSSSSGGNAAATNVSPHNNHPGPKATRRRVDAASDSHSEADESAAGGCNAACAAVASNNINSISNAGCHHRNCQRHPVIKYLLLRRKLFFFLPEVLLI GVEEGCQGAAAMAQGLTFGKCLGRRIIGALMFMTVVSVFVKIFLLSHHHHHNNHIDSLLENNINGGDGGGGGGGGKEMNGLLILQTFKDDWAMAQRVLSE TQSSIPKRLLEKFPTPEIWMKPNNDNFYKCITRPRNPLLRSRKTNGYLLVHANGGLNQMRTGICDMVAVAKLMNATLVLPSLDHESFWTDPSTFKDIFDW KHFMKVLRDDVDIVEYLPPHFAKKKPLVKAPISWSKASYYRGEAVLLKKHKVMKYTHTDSRLANNGLSASIQKLRCRANYEALRYSQDIEDLGKTLVARL RKTDGPYVALHLRYEKDMLSFTGCNHNLTAEEAEELRIMRYSVPHWKEKQIDSEARRQEGGCPMSPREAAMFLKAMGYPGSTTVYIVAGPIYGSNSMAEF QEEYPNVFTHSTLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFRKTINPNRQNFVALIDQLNEGSLSFDDFASKVRTLH EHRLGQPYNRRLGESPRLEENFYANPLPGCLCNRTQERMSTLAAIERRQKNVGTASGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	0	1
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	1.0	0.9955
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	1.7	0.9781
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	2.0	0.9832
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	4.5	0.9673
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10021412 [exp]	4.6	0.9490
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	5.0	0.9630
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	5.2	0.9464
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	5.5	0.9289
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	6.0	0.9628
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	6.3	0.9121

Compare expression of checked genes

Lus10035540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.