Plant FIBer expression Database

Lus10035541 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37970 133 / 3e-40 SOUL-1 SOUL heme-binding family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000106
[exp]
194 / 8e-65 AT2G37970 207 / 3e-68 SOUL heme-binding family protein (.1)
Lus10027752
[exp]
180 / 7e-59 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1)
Lus10017193
[exp]
134 / 6e-41 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1)
Lus10000227
[exp]
85 / 2e-21 AT2G37970 222 / 1e-73 SOUL heme-binding family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G109400
[exp]
131 / 2e-39 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0319 SHS2 PF04832 SOUL SOUL heme-binding protein
Representative CDS sequence
>Lus10035541 pacid=23147490 polypeptide=Lus10035541 locus=Lus10035541.g ID=Lus10035541.BGIv1.0 annot-version=v1.0
ATGGGTATGGTGCTAGGAAAGATCCCAGTCGAAACTCCAAAGTACGAACTGATCAAAGCCTGCAAGGACTACACGATCTGGAAATACGTTCCAGTGGTTG
CGGCACAGATTACATACAGCCCGGCCGAGTTCAAGGGAGACAAAGATGGGGGCTTTACGGTTCTCGCCAAGTACATAGGCGTGTTTGAGACCCCACAGAA
TGCCAAGCCGGAGGAGAAAATTGCAATGACTGCTCCTGTTATCTCGAAAACCGGCAAAAAGATTGCGATGACTGCTCCTGTGGTGACTAAGAGATGGAAA
AATAACAAACAATATAACAAAACTAATTATCAGCCCCAGGTTATGAGATCAATCTCAACACGTGTCGGGTGA
AA sequence
>Lus10035541 pacid=23147490 polypeptide=Lus10035541 locus=Lus10035541.g ID=Lus10035541.BGIv1.0 annot-version=v1.0
MGMVLGKIPVETPKYELIKACKDYTIWKYVPVVAAQITYSPAEFKGDKDGGFTVLAKYIGVFETPQNAKPEEKIAMTAPVISKTGKKIAMTAPVVTKRWK
NNKQYNKTNYQPQVMRSISTRVG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37970 SOUL-1 SOUL heme-binding family prote... Lus10035541
[exp]
0 1
AT3G22660 rRNA processing protein-relate... Lus10036936
[exp]
4.5 0.8513
AT1G60560 SWIM zinc finger family protei... Lus10035898
[exp]
4.7 0.8440
AT1G16670 Protein kinase superfamily pro... Lus10028149
[exp]
5.3 0.8727
AT4G35785 RNA-binding (RRM/RBD/RNP motif... Lus10041854
[exp]
9.6 0.8599
AT1G15200 protein-protein interaction re... Lus10023800
[exp]
10.4 0.8835
Lus10043057
[exp]
11.0 0.8394
Lus10006003
[exp]
12.0 0.8516
AT5G36930 Disease resistance protein (TI... Lus10018972
[exp]
14.1 0.8559
AT3G44590 60S acidic ribosomal protein f... Lus10026712
[exp]
16.3 0.7962
AT5G06350 ARM repeat superfamily protein... Lus10004194
[exp]
21.5 0.8391

Lus10035541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.