Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01090 160 / 7e-46 Concanavalin A-like lectin family protein (.1) AT3G09190 127 / 9e-34 Concanavalin A-like lectin family protein (.1) AT3G09035 103 / 9e-25 Concanavalin A-like lectin family protein (.1) AT5G03140 60 / 1e-09 Concanavalin A-like lectin protein kinase family protein (.1) AT3G54080 57 / 8e-09 Concanavalin A-like lectin family protein (.1) AT5G03350 54 / 3e-08 Legume lectin family protein (.1) AT1G53080 50 / 1e-06 Legume lectin family protein (.1) AT3G55550 44 / 0.0001 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 44 / 0.0002 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 44 / 0.0002 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027751 [exp] 570 / 0 AT5G01090 166 / 6e-48 Concanavalin A-like lectin family protein (.1) Lus10021117 [exp] 283 / 3e-93 AT5G01090 210 / 5e-65 Concanavalin A-like lectin family protein (.1) Lus10017194 [exp] 269 / 1e-87 AT5G01090 219 / 3e-68 Concanavalin A-like lectin family protein (.1) Lus10040276 [exp] 56 / 3e-08 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004709 [exp] 53 / 1e-07 AT3G55550 257 / 1e-80 Concanavalin A-like lectin protein kinase family protein (.1) Lus10042795 [exp] 44 / 0.0001 AT5G42120 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029769 [exp] 44 / 0.0002 AT5G42120 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 43 / 0.0004 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094900 [exp] 251 / 3e-81 AT5G01090 265 / 2e-86 Concanavalin A-like lectin family protein (.1) Potri.016G107200 [exp] 235 / 7e-75 AT5G01090 230 / 9e-73 Concanavalin A-like lectin family protein (.1) Potri.010G194700 [exp] 129 / 2e-34 AT5G01090 117 / 5e-30 Concanavalin A-like lectin family protein (.1) Potri.001G368300 [exp] 52 / 6e-07 AT5G55830 853 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 51 / 9e-07 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G093700 [exp] 44 / 0.0001 AT5G55830 849 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 42 / 0.0005 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10035542 pacid=23147599 polypeptide=Lus10035542 locus=Lus10035542.g ID=Lus10035542.BGIv1.0 annot-version=v1.0 ATGGTCATGTCCAACTTCAAACTACTCCCCTTACTCTTCTTCTTCCACCTCAATCTGCTGCTTGCAGACCCAGTAACCCACTCATTCTCCTTCACAAATT TCGACAAAGATCCAAACTTTGATTCCACCCTTTCACTCTACGGCGATGCAAAGCTCTTCGCCGCTAATGGGTCTTCTTCTTCTTCTCCATCTCACATTCA ACTCTCCAGTGCTGGTGGCCAAGTCATGTACAAGAAACCCATCAAGCTCCTCCAAGGTAGTAGCAGAGATTTCACGTCTTTCTCGACTTACTTCTCCTTT CTTATCTCCCCAGATAGCGTCCTGTCTTTGATTCTAGTCCCCAGTCTCGAATTCAACTCCAGTGTATTGGCTAGCAACACTCCCTTTGGGGTTGGGAATA TGTTAAATTGGACTGGAATCATTGCTGTTGAATTTGGTGCTTTGAATGATGCCAAATATGGAGACTTGGAAAAAGGTCGGTTCTTTTCATTAAAGTTGAG GCACTATCCATCTGCTAAAGCAATGTTGAGCAGTGGCAAGAGGTTGCATGCATGGGTTGATTGTTCTTCAAACAGATTGGAAGTCAGGTTGAGTGAATCT AGGGAAGTCAAACCAGTTGACCCTCTTGTTTTTGCCCAAATTGGTTTCTCAAGGATGTGGTCTATGTGGAGTAGTACTAGTGATGAAGTTATGATTGGTT TGAGTTCTTCTTCCAATGCATCAGAAAGTTGCTTCCTTTACTCTTGGAGCTTCCAGATGAGAAGTTACCCTCACTGGATGCATTCTCAGCCTTTGGATCC AAATGGTTTCCATTCAGAACTGAAACCAATGGTTGTAAATGTGAGAAGAGGAGGAGACTATGTTGTTATGTGGGTGATTGCTGCTTTGATCTTGGGAGTT GGGTGTGGAGCTTTGGGGGCATTCATGGGGATCAATCTTTGCACCATGTTCAGTAACAGGAGGCCAGATGAGTGTTCTTCGTCTTGTTCAGTTGTTCATC CTGTGGATTTTGAGTATGAGAAGGTCAAAGTAGTGGTTGTGGAGGATACTAAAGTCTTTGAAGATCATGGAAAGCAGTGTGAGTAG
AA sequence Show only first row Show all	>Lus10035542 pacid=23147599 polypeptide=Lus10035542 locus=Lus10035542.g ID=Lus10035542.BGIv1.0 annot-version=v1.0 MVMSNFKLLPLLFFFHLNLLLADPVTHSFSFTNFDKDPNFDSTLSLYGDAKLFAANGSSSSSPSHIQLSSAGGQVMYKKPIKLLQGSSRDFTSFSTYFSF LISPDSVLSLILVPSLEFNSSVLASNTPFGVGNMLNWTGIIAVEFGALNDAKYGDLEKGRFFSLKLRHYPSAKAMLSSGKRLHAWVDCSSNRLEVRLSES REVKPVDPLVFAQIGFSRMWSMWSSTSDEVMIGLSSSSNASESCFLYSWSFQMRSYPHWMHSQPLDPNGFHSELKPMVVNVRRGGDYVVMWVIAALILGV GCGALGAFMGINLCTMFSNRRPDECSSSCSVVHPVDFEYEKVKVVVVEDTKVFEDHGKQCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01090			Concanavalin A-like lectin fam...		Lus10035542 [exp]	0	1
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10026471 [exp]	2.4	0.9285
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10007017 [exp]	3.5	0.9002
AT2G45720			ARM repeat superfamily protein...		Lus10041369 [exp]	3.9	0.8987
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10019912 [exp]	5.7	0.9200
AT4G20040			Pectin lyase-like superfamily ...		Lus10038369 [exp]	10.5	0.8442
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038065 [exp]	17.5	0.8967
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	20.7	0.8817
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012678 [exp]	25.3	0.9020
AT3G63170			Chalcone-flavanone isomerase f...		Lus10042591 [exp]	27.5	0.8580
AT5G61660			glycine-rich protein (.1)		Lus10032507 [exp]	28.8	0.8310

Compare expression of checked genes

Lus10035542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.