Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09210 283 / 1e-94 PTAC13 plastid transcriptionally active 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027750 [exp] 564 / 0 AT3G09210 290 / 4e-97 plastid transcriptionally active 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094800 [exp] 283 / 4e-94 AT3G09210 357 / 6e-123 plastid transcriptionally active 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035543 pacid=23147644 polypeptide=Lus10035543 locus=Lus10035543.g ID=Lus10035543.BGIv1.0 annot-version=v1.0 ATGATGAACGAAGGACTGGTGCTTCAATGGAGTAGTAGTCGTTACTACTGCTGCAACCGGAATACCATTGCCCCGCCTTCGTTGCGTTTTCCGGGAACCA AAAGGATATGTCGACCGTTGATCAGAGCATCAACGACGGAGGAGCAACAGTTGACGGCGAAAGACAGACGGCAGCTGAGGAACCAACGGAGGGAGAGCAA ATCGGGATACAGCTGGAGAGAAGAAGTCGAGGAAAGGCTTAGCATGAAGACTAAGAAGAATGTAATCCGGAAGAAGGACGAGCTCAGCTTGGATCGCTTA GCTGAATTAGGTCCTCAATGGTGGGGGCTTAAGACTGCTATGACTCGTGGCCATCTGACGGCTGATGTTGTCGCCAAATCGTTGGCTCGTAAGTATCCGG AATTCGAATTCAAGATGTATGCTCCGTCGGTGCAAATAAAGAGGAAGCTGAAGAGCGGGAAGATATCGACAAAGCTGCAGCCGATATTTCCTGGCACTGT GTTCCTTTGCTGTGTGTTGAACAAAGAGATTCACGATTTTGTATATGGATGCAGAGGAGTTGGTGGCTTTGTTGGTATCAAAGTTGGATACATGGGGAGA CTATACAACATCCCTAGGCAAGTATCTGAGGAGGACATTCAACAAGTCGTTAAGCGGGCAGAGGAGGAACAGGAGAAACATGATCAGGCCTTTGAGGAAG AGGAGCAAGCAAGAAGAGTAGAAGAGAGCTCGAAAAAGCTTAAGGCCAAAGATACTGTAAAAGAATCGTCAAAGAAGAAGAAGGTTAGCAAGCGGCTGTC CGCTGGTTCGATTGTTCGCGTCCAATCTGGGCCCTTTGCAGAATTCGAAGGCAGCCTTAAGAAAGTTCATCGCAAAACCGGAAAGGCAACTGTTGGCTTT ACACTATTTGGTAAAGAGACCTTAGTAGAATTAGATCTCAATGAGATTGTAACAGAAGAAGCAGCATCAATCTAA
AA sequence Show only first row Show all	>Lus10035543 pacid=23147644 polypeptide=Lus10035543 locus=Lus10035543.g ID=Lus10035543.BGIv1.0 annot-version=v1.0 MMNEGLVLQWSSSRYYCCNRNTIAPPSLRFPGTKRICRPLIRASTTEEQQLTAKDRRQLRNQRRESKSGYSWREEVEERLSMKTKKNVIRKKDELSLDRL AELGPQWWGLKTAMTRGHLTADVVAKSLARKYPEFEFKMYAPSVQIKRKLKSGKISTKLQPIFPGTVFLCCVLNKEIHDFVYGCRGVGGFVGIKVGYMGR LYNIPRQVSEEDIQQVVKRAEEEQEKHDQAFEEEEQARRVEESSKKLKAKDTVKESSKKKKVSKRLSAGSIVRVQSGPFAEFEGSLKKVHRKTGKATVGF TLFGKETLVELDLNEIVTEEAASI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10035543 [exp]	0	1
AT3G18680			Amino acid kinase family prote...		Lus10020884 [exp]	1.0	0.9667
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10022255 [exp]	3.5	0.9563
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Lus10003577 [exp]	4.0	0.9490
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	6.5	0.9596
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10041346 [exp]	6.8	0.9602
AT5G53850			haloacid dehalogenase-like hyd...		Lus10041928 [exp]	9.5	0.9493
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	10.1	0.9529
AT2G21385			unknown protein		Lus10028792 [exp]	12.1	0.9385
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10042542 [exp]	12.6	0.9264
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10008131 [exp]	13.0	0.9443

Compare expression of checked genes

Lus10035543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.