Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37960 151 / 5e-42 unknown protein AT3G54060 145 / 6e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027749 [exp] 361 / 4e-124 AT2G37960 234 / 2e-72 unknown protein Lus10021116 [exp] 194 / 6e-58 AT2G37960 267 / 5e-84 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094600 [exp] 171 / 6e-49 AT2G37960 322 / 9e-105 unknown protein Potri.016G109100 [exp] 164 / 2e-46 AT2G37960 305 / 2e-98 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035544 pacid=23147395 polypeptide=Lus10035544 locus=Lus10035544.g ID=Lus10035544.BGIv1.0 annot-version=v1.0 ATGAACAACTCTGGTGTGGGGAAAGGGAACATGACGCCGACTCAGGTGGCGTTCCTAGTGGACAGATATCTGTGCGACAACAATTTCTCCGGGACTCGTA CCGTGTTCAGGAACGAAGCTTCTTCGCTAATCTCGAGAACTCCGGTTAATGAGGCGCCGAAGAGTTTGTTGAGCTTAGGGGAGATATTGGAGGAGTATAT CAGCTTGAAAGGGCAGAAGGTGATGTTGGATCAAGAAAGGGTGCTTTTAGAGCACGAGAATTCGAGGGTATGCAACCTCTTACATGGTATGCAAGAAGTG ATGAACGTCTACAATGGTAGCTCCATTCCATCTGTTGCGCCGATTATCCAGGCCTCTGCGACGAAGCAGGTCACAGTATTTTCTCGAGCTCCCGCAAATT TGGTTCCTATTCCCAGGGCTGCCAACAGTAAGCTTTCCGCACCAGTTACGAATCTGTCATTGACGAGAAAGCGACCGGGTGCAAATTCGAATGGAGTTGT GCAGCAGGAACAAGCCCCTCGTGCTTTGAAGAAGTTCAAGTTACTCTCCAAAGCCACACCAAGTCCTGCAGCTTGTGACCAGACTACTAGTAATGCATCC ACTGGTAAGGAAGCTGCTCATGGTTCCACTAATGGATCATGCATTGCTAAGAGCTTGCTCAATCAGGCATCAGCTGTCTTCATCTCCTCGAATCGAATGT TCTTGCCCCCAAACAACTCCTCATGCGTGAAGGCGAGGCTGGACTTTGGTGGTTCTGATGAGACTGTCTGTGTGGATAATTATGATCTCGGATTTTATGA CAATGTCTCGGCGCCAGACACTGATAAGGATGATGATATTTTTGGCATGAATTTGCCTGATATATTTGGATCTGACTTCTCCTTTGCTCAGCTGCTAAAG GAACTAGATCTTGGATTGGAAGACCTGCCTGTCCTTGTGAACCAACTTCAACAGCACAATTCGTTGTAG
AA sequence Show only first row Show all	>Lus10035544 pacid=23147395 polypeptide=Lus10035544 locus=Lus10035544.g ID=Lus10035544.BGIv1.0 annot-version=v1.0 MNNSGVGKGNMTPTQVAFLVDRYLCDNNFSGTRTVFRNEASSLISRTPVNEAPKSLLSLGEILEEYISLKGQKVMLDQERVLLEHENSRVCNLLHGMQEV MNVYNGSSIPSVAPIIQASATKQVTVFSRAPANLVPIPRAANSKLSAPVTNLSLTRKRPGANSNGVVQQEQAPRALKKFKLLSKATPSPAACDQTTSNAS TGKEAAHGSTNGSCIAKSLLNQASAVFISSNRMFLPPNNSSCVKARLDFGGSDETVCVDNYDLGFYDNVSAPDTDKDDDIFGMNLPDIFGSDFSFAQLLK ELDLGLEDLPVLVNQLQQHNSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37960			unknown protein		Lus10035544 [exp]	0	1
AT1G79890			RAD3-like DNA-binding helicase...		Lus10011447 [exp]	4.2	0.9302
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	14.6	0.9029
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	16.7	0.8998
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	17.8	0.8966
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10003777 [exp]	21.0	0.8929
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10026954 [exp]	21.1	0.8947
AT2G44580			zinc ion binding (.1)		Lus10019511 [exp]	23.5	0.8706
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	23.5	0.8938
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10020154 [exp]	26.8	0.8900
AT1G20720			RAD3-like DNA-binding helicase...		Lus10012249 [exp]	29.7	0.8186

Compare expression of checked genes

Lus10035544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.