Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22285 154 / 8e-45 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT4G22350 154 / 9e-45 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) AT4G22410 124 / 1e-34 Ubiquitin C-terminal hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027746 [exp] 242 / 4e-81 AT4G22285 321 / 9e-107 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10003795 [exp] 207 / 7e-65 AT4G22285 713 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10010490 [exp] 201 / 2e-62 AT4G22350 714 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G014000 [exp] 174 / 4e-52 AT4G22350 699 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Potri.006G010100 [exp] 171 / 5e-51 AT4G22350 734 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Lus10035547 pacid=23147532 polypeptide=Lus10035547 locus=Lus10035547.g ID=Lus10035547.BGIv1.0 annot-version=v1.0 ATGGTGGACGAAGAAGGTTCAACGAAGAGACAGAGAGTTGAGATAGAAGGTTCATCTCGGAGTCAGGCGATTGATAATCCTCTAGTCGATGAACTTGATG GATTAGAAGGTAGCATCCAGAAGCAATTGGAACCTCGTTCGGACTGTCCTTATCTGGACACAGTGAACCGCGAGGTGCTGGATTTCGATTTGGAGAAGTT ATGTTCGGTGTTGATGTCGAATGTGAATCGCGAGGTGCGGGATTTTGAATCGGAGAAGTTGCGTTTGGTGTCGAATGTGAATGTGTATGCGTGTCTGGTG TGGGAAATATTACCAAGGAAGGGGGCGAAGTCCCATGCGTATACTCACAGTGTTGAAGCAGGGCATCATGTGTATATCAACTTAGAGACTGAGAAGGTGT ACTGTCTTCCTGACGGATATGAGATTATTGATCCTTCTTTGGATGACATACGAGATGCGCTGAATCCGAGGTTTACAAAGGAACGAGTCGAGCAGTTGGA CTAG
AA sequence Show only first row Show all	>Lus10035547 pacid=23147532 polypeptide=Lus10035547 locus=Lus10035547.g ID=Lus10035547.BGIv1.0 annot-version=v1.0 MVDEEGSTKRQRVEIEGSSRSQAIDNPLVDELDGLEGSIQKQLEPRSDCPYLDTVNREVLDFDLEKLCSVLMSNVNREVRDFESEKLRLVSNVNVYACLV WEILPRKGAKSHAYTHSVEAGHHVYINLETEKVYCLPDGYEIIDPSLDDIRDALNPRFTKERVEQLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	0	1
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10034372 [exp]	1.4	0.8041
AT1G02810			Plant invertase/pectin methyle...		Lus10029866 [exp]	2.0	0.7727
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024367 [exp]	2.4	0.7684
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016861 [exp]	4.5	0.7702
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	9.2	0.7797
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	9.5	0.7899
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	9.8	0.7428
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	14.4	0.7588
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	15.5	0.7294
					Lus10033891 [exp]	20.3	0.6435

Compare expression of checked genes

Lus10035547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.