Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 144 / 1e-42 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 134 / 8e-39 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 120 / 1e-33 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 64 / 5e-12 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 65 / 6e-12 RING/U-box superfamily protein (.1.2.3.4) AT2G45530 61 / 8e-11 RING/U-box superfamily protein (.1) AT5G03180 58 / 9e-10 RING/U-box superfamily protein (.1.2) AT3G09760 57 / 3e-09 RING/U-box superfamily protein (.1) AT3G06330 56 / 3e-09 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027744 [exp] 356 / 1e-125 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 196 / 2e-62 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 156 / 1e-47 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 149 / 7e-45 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 147 / 8e-44 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 118 / 7e-33 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 117 / 1e-32 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10029242 [exp] 91 / 9e-22 AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 89 / 4e-21 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105900 [exp] 176 / 6e-55 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 172 / 2e-53 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 148 / 2e-44 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 143 / 2e-42 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 118 / 5e-33 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 115 / 5e-32 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 92 / 1e-21 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 82 / 4e-18 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G149200 [exp] 66 / 8e-13 AT2G45530 236 / 3e-78 RING/U-box superfamily protein (.1) Potri.001G452800 [exp] 66 / 2e-12 AT2G45530 259 / 3e-87 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10035549 pacid=23147680 polypeptide=Lus10035549 locus=Lus10035549.g ID=Lus10035549.BGIv1.0 annot-version=v1.0 ATGGAAATCTCTCGCCACCACCACCACCACATCGATTTAGAACAGGGGACTGTTTTCCGCCTCCACCACTACCTCCACGACGACGGCGACCTAAGCTGCT TCTCCGATGCAGAGGACGGCGGCGGCGCAATTTACTCTTCCCAGTTCTACTCCAGGACCTCTTCCGGCGACGAAGAGTACTACACCTTTGCCGTTCTCCA CTCGAGGACGGTTTCGTCCGACTCGGCGGTGATAAAGGTGGGATCTTTGGCAGAGGAGGCGGAGGAGGATGATAAAACGGCGGCGGCGGCAGCGGAGAAA GACTGTAGGATTTGCCAGCTGGGTAATTTGGAGAGCGACGGAATTATGATAGAGTTGGGTTGTTCATGCAAGGACGATCTTGCTGCTGCTCACAAACTCT GCGCCGAGACCTGGTTCAAGATCAAGGGCAACAAGACGTGCGAGATCTGCAACTCGGTTGCCAAGAACGTCATGGGAGTGGGAGCAGTACAAGAGGTACC AACTCAGAATTCAGTAGTGGTTGTCGAGCATTCGAACGAGTCCAGTAACAACGCGTCTATAGATTTACCATCGTCGTTGTCGCTACCGCTGGCTCAGAAT TTGGAGACGAATCAGACCTTCTGGCAAGGCAACCGGTTCCTGAATTTCATGCTGGCTTGTATGGTTTTTGCCTTTGTCATCTCCTGGCTGTTCCACTTCA ATGTACCATCTTCTAATGAATAG
AA sequence Show only first row Show all	>Lus10035549 pacid=23147680 polypeptide=Lus10035549 locus=Lus10035549.g ID=Lus10035549.BGIv1.0 annot-version=v1.0 MEISRHHHHHIDLEQGTVFRLHHYLHDDGDLSCFSDAEDGGGAIYSSQFYSRTSSGDEEYYTFAVLHSRTVSSDSAVIKVGSLAEEAEEDDKTAAAAAEK DCRICQLGNLESDGIMIELGCSCKDDLAAAHKLCAETWFKIKGNKTCEICNSVAKNVMGVGAVQEVPTQNSVVVVEHSNESSNNASIDLPSSLSLPLAQN LETNQTFWQGNRFLNFMLACMVFAFVISWLFHFNVPSSNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10035549 [exp]	0	1
					Lus10003607 [exp]	3.5	0.8234
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	6.1	0.8263
AT5G44005			unknown protein		Lus10008219 [exp]	7.7	0.7529
AT5G66440			unknown protein		Lus10023551 [exp]	12.8	0.7979
AT3G44716			unknown protein		Lus10009406 [exp]	13.5	0.7518
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	18.4	0.7859
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10010520 [exp]	18.5	0.7776
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	18.7	0.7510
AT1G62760			Plant invertase/pectin methyle...		Lus10004327 [exp]	19.0	0.7811
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10027744 [exp]	20.2	0.7542

Compare expression of checked genes

Lus10035549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.