Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54030 817 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G59010 782 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT1G63500 736 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 716 / 0 BSK3 BR-signaling kinase 3 (.1) AT5G41260 707 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT1G01740 629 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT4G35230 621 / 0 BSK1 BR-signaling kinase 1 (.1) AT3G09240 611 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 600 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G46570 588 / 0 BSK2 BR-signaling kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027743 [exp] 997 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10040719 [exp] 779 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10008530 [exp] 747 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 746 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10016454 [exp] 740 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10001998 [exp] 728 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10037856 [exp] 706 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10030383 [exp] 705 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10018849 [exp] 685 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G093900 [exp] 885 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 877 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G246400 [exp] 800 / 0 AT5G59010 868 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.009G039500 [exp] 782 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.014G082400 [exp] 744 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.002G158400 [exp] 742 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.001G104700 [exp] 724 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.003G126700 [exp] 721 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.004G182800 [exp] 621 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 613 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10035550 pacid=23147382 polypeptide=Lus10035550 locus=Lus10035550.g ID=Lus10035550.BGIv1.0 annot-version=v1.0 ATGGGAGCTCGCTGTTCTAAGTTCCCATTCTGCTGCTTCACCTCTCCCTTCAAGCCATCCGTCCTTGAATCTTCTGATTTTGAGAAAAATGGGGGCAAAA AAGAGGCTGGCTTTAAGGAGTTCACATTGGAGCAGCTGAAATCCGCCACCGGCGGCTTCTCCTCCGACAACATTGTGTCGGAGCACGGCGAGAAGGCTCC CAACGTTGTCTACAAAGGGAAGCTGGATGCTGACCGTTGGATCGCCGTCAAGCGGTTCAACCGGTTGGCCTGGCCAGATTCTCGCCAGTTCCTGGAGGAA GCGAAGGCGGTGGGGAATCTGAGGAGCGACCGGCTTGCGAATCTGATCGGGTTTTGCTGCCAAGGTGAAGAGAGATTGTTGGTCGCTGAGTTCATGCCCA ATGACACCCTCGCCAAGCATCTCTTTCACTGGGAGAGCCAGCCGATGAAATGGGCAATGAGGTTGAGAGTGGCTCTGTATCTGGCTCAAGCTTTGGAGTA TTGCAGCAGCAAAGGGAGGGCTTTGTATCATGATCTCAATGCCTATAGGGTTCTCTTTGATAAGGATGGGAATCCAAGGCTATCTTGCTTCGGGATGATG AAGAACAGCCGAGATGGCAAGAGTTACAGCACCAATCTCGCCTTCACCCCTCCCGAGTACTTGCGAACCGGTAGAGTGACTGCAGAGAGTGTAGTCTACA GCTTTGGGACACTCTTGCTGGATCTTCTGAGTGGGAAACACATCCCTCCAAGTCATGCACTTGACTTGATCCGCGGCAAGAACTTCCTGATGCTGATGGA TTCCGCACTCGAAGGCCATTTCTCAAAAGATGACGGCACTGAATTGGTCAGGTTAGCCACCCGTTGCTTGCAGCTCGAAGCTCGTGAGAGGCCGAACGCA AAGAACCTTGTCACTTCCCTCGTTTCGCTCCAGAAAGAAACCGAGGTTCCATCTCATGTCTTGATGGGAATCCCTTCAGCAACTGAGCCATTATCTTTAA CTCCGTTTGGGGAGGCCTGCTTAAGGATGGACCTCACTGCTGTACACGAAATGCTCGAGAAAGTAGGATACAAGGATGATGAAGGGATCGCCAACGATTT ATCATTTCAAATGTGGACAAGCCAAATGCAAGAGACCTTGAACTCCAAGAAGCACGGAGACACTGCCTTTCGAGCTAAGGATTTCCCCACCGCCATCGAT TGCTACTCGCAATTCGTCGATGGGGGGACTATGGTGTCGCCAACCGTGTACGCGAGGCGCTGCCTATCATACTTGATGAACGAGATGGCTCAAGAAGCGC TTGGAGACGCGATGCAAGCTCAAGTCGTTTCGCCAGAGTGGTACATTGCGTCCTACTTACAAGCAGCCTGCATGTTCAGCCTTGGAATGGAGGATGATGC TCAGGAAGCACTCAAAGACGGCACCAACTTTGAAGCCAGAAGGAACAGAAACTGA
AA sequence Show only first row Show all	>Lus10035550 pacid=23147382 polypeptide=Lus10035550 locus=Lus10035550.g ID=Lus10035550.BGIv1.0 annot-version=v1.0 MGARCSKFPFCCFTSPFKPSVLESSDFEKNGGKKEAGFKEFTLEQLKSATGGFSSDNIVSEHGEKAPNVVYKGKLDADRWIAVKRFNRLAWPDSRQFLEE AKAVGNLRSDRLANLIGFCCQGEERLLVAEFMPNDTLAKHLFHWESQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDKDGNPRLSCFGMM KNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLATRCLQLEARERPNA KNLVTSLVSLQKETEVPSHVLMGIPSATEPLSLTPFGEACLRMDLTAVHEMLEKVGYKDDEGIANDLSFQMWTSQMQETLNSKKHGDTAFRAKDFPTAID CYSQFVDGGTMVSPTVYARRCLSYLMNEMAQEALGDAMQAQVVSPEWYIASYLQAACMFSLGMEDDAQEALKDGTNFEARRNRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54030			Protein kinase protein with te...		Lus10035550 [exp]	0	1
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	2.8	0.8272
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10040943 [exp]	8.4	0.6994
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	12.3	0.8069
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	14.9	0.8475
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	21.8	0.7830
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030586 [exp]	21.9	0.7664
AT4G32000			Protein kinase superfamily pro...		Lus10001937 [exp]	23.1	0.7243
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10013469 [exp]	23.3	0.7320
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Lus10022272 [exp]	25.8	0.7874
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	27.0	0.8126

Compare expression of checked genes

Lus10035550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.