Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54020 490 / 2e-176 AtIPCS1 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) AT2G37940 480 / 1e-172 ERH1, AtIPCS2 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) AT2G29525 416 / 1e-147 AtIPCS3 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027742 [exp] 633 / 0 AT3G54020 477 / 6e-171 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10017199 [exp] 560 / 0 AT3G54020 462 / 7e-166 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10021111 [exp] 555 / 0 AT3G54020 462 / 1e-165 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Lus10040720 [exp] 394 / 1e-137 AT2G29525 399 / 6e-140 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G105700 [exp] 528 / 0 AT3G54020 493 / 1e-177 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.006G093800 [exp] 528 / 0 AT2G37940 490 / 2e-176 enhancing RPW8-mediated HR-like cell death 1, Arabidopsis Inositol phosphorylceramide synthase 2 (.1) Potri.001G246300 [exp] 382 / 4e-133 AT3G54020 374 / 2e-130 Arabidopsis Inositol phosphorylceramide synthase 1 (.1) Potri.005G193300 [exp] 44 / 0.0001 AT1G43580 592 / 0.0 Sphingomyelin synthetase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035551 pacid=23147496 polypeptide=Lus10035551 locus=Lus10035551.g ID=Lus10035551.BGIv1.0 annot-version=v1.0 ATGACGCTTTACATTGGCCGAGAAACTTCTAAGCTATGGAAGAGAGTTTGTGCAGAAACTAGTACCGAGTTGAGCCTTCTTGCCGAGAACTGGCGATACA TTCTTGCCGGCTTGATTTGTCAGTACATTCATGGTTTGGCTGCAAGGGGGATTCACTACTTCCATCGACCGGGGCCGGTGTTGCAAGATGTCGGGTTCTA CTTACTTCCGGAGCTTGGACAAGATAAAGGCCACATTAGTGAGATGCTCTTCTCATGTGTCTTTCTATCCTTTGTTTTGTGGACATTCCATCCATTCATC TTTAAGGTCAAGAAGATATACACAGTCCTTGTGTGGTGCAGGGTTCTAGCTTTTCTAGTTGCTTCTCAATTTCTTCGGATCATCACATTCTATTCTACAC AACTTCCCGGTCCAAATTATCATTGCCGTGAGGGCTCGAAACTTGCTAGATTACCTCGTCCTCAGAGTGTACATGAAGTCCTCTTGCTGAACTTTCCTCG TGGTGTTATGTTTGGCTGTGGTGATTTGATCTTCTCATCACACATGATATTTACTTTGGTATTTGTTCGTTCGTACCAGAAGTATGGATCACAAAGATGC ATAAAGCAGCTCGCTTGGCTTGTTGCCATTGTTCAGAGCCTCTTAATCATAGCGTCCAGGAAGCACTACACAGTCGACGTCGTGGTTGCATGGTACACAG TTAATTTGGTGGTGTTCTTCGTGGACAAGAAATTGCCTGAACTCCCTAACCGGGCCGGTGGAGCTGCAGCAGCATCGTTGCTACCCGTGACTACCAAAGA CAAGAACGAAAATACGAAAGAAGAGAACCACAAGCTCTTGAATGGAAACTCAGTTGACGATTGGCGGATAAGAACCCAAGTGAATGGCAAGACCACAGAA GATACGAATGGTATCCCTCCCAATATGAATGCGATGAACGGTGCATAG
AA sequence Show only first row Show all	>Lus10035551 pacid=23147496 polypeptide=Lus10035551 locus=Lus10035551.g ID=Lus10035551.BGIv1.0 annot-version=v1.0 MTLYIGRETSKLWKRVCAETSTELSLLAENWRYILAGLICQYIHGLAARGIHYFHRPGPVLQDVGFYLLPELGQDKGHISEMLFSCVFLSFVLWTFHPFI FKVKKIYTVLVWCRVLAFLVASQFLRIITFYSTQLPGPNYHCREGSKLARLPRPQSVHEVLLLNFPRGVMFGCGDLIFSSHMIFTLVFVRSYQKYGSQRC IKQLAWLVAIVQSLLIIASRKHYTVDVVVAWYTVNLVVFFVDKKLPELPNRAGGAAAASLLPVTTKDKNENTKEENHKLLNGNSVDDWRIRTQVNGKTTE DTNGIPPNMNAMNGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	0	1
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	1.0	0.9735
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029602 [exp]	1.7	0.9548
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Lus10026546 [exp]	2.0	0.9507
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029601 [exp]	3.2	0.9484
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	4.2	0.9587
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	5.5	0.9437
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	8.1	0.9218
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	8.5	0.9327
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10029073 [exp]	9.7	0.9066
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	9.9	0.8909

Compare expression of checked genes

Lus10035551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.