Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36720 800 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G27980 624 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 556 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 491 / 3e-157 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT4G14920 171 / 7e-43 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 160 / 2e-39 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT3G14980 154 / 1e-37 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 147 / 1e-35 PHD finger transcription factor, putative (.1) AT2G36710 138 / 1e-34 Pectin lyase-like superfamily protein (.1) AT1G05310 123 / 9e-30 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027738 [exp] 1528 / 0 AT2G36720 821 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024419 [exp] 470 / 7e-149 AT2G37520 842 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10025315 [exp] 468 / 4e-148 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10016160 [exp] 369 / 6e-110 AT2G37520 355 / 3e-106 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10027737 [exp] 233 / 4e-67 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10042283 [exp] 183 / 3e-46 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10006110 [exp] 177 / 8e-45 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10015266 [exp] 174 / 1e-43 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10010562 [exp] 171 / 9e-43 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097300 [exp] 1023 / 0 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 769 / 0 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 696 / 0 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.004G217600 [exp] 669 / 0 AT2G27980 740 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G083600 [exp] 536 / 4e-174 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120100 [exp] 165 / 8e-44 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.002G118600 [exp] 169 / 1e-42 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.008G152600 [exp] 169 / 5e-42 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 168 / 7e-42 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 167 / 1e-41 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10035553 pacid=23147418 polypeptide=Lus10035553 locus=Lus10035553.g ID=Lus10035553.BGIv1.0 annot-version=v1.0 ATGGCGCTGGCTGATTCGTTGTCGGAGGTTATTCACTCTCAGCTGGCTACTGCTTCCACTGCTGCTGCTGCTGCTGCTGCTAGTCTGCTCACTCAGCCTC CGAGCTCGGAGATAACGGAGCTCGAAGAGGAGTTTGGAGCTGCTAAGGTAAACGGTTTCTTCGTCTATTCCCGCGTTAAGAAGAGTGGTAGAGCTAGAGA TGACGATGGGATTGCTGCCGACGACGACGGCTGTGAGAGCAAGAGGATTAGGTGCTTAGAGCTGAAGCATGGAGAGGTAGCTAGGTGTAATGGAGGGGCT TCGATTTGGAAAGACGAGGCGAAGTGTGAATCGACGGTGCATGGAGGACCAGACAATGGGAATTTACGGATCTGTATTCATAAAGGTAATAAGGTGAATA GGAGTAAGATGAGGAAGTTTACGCGGTCGGCTATCAAGCTTAGTGTAGAGTCGGAGGTGGAGGTCGATGTGACCGGTGTGGAATCCGTCGGTAGCGGATC GGTATCGACGGTGAATGTTGAGGTGATTGGTTCGGAAGGAAGTGCTGCAGTGATAGCCCCTCCGAAGAAGAATTTGGAGATGAAGATGTCGAAGAAGATT GCACTTCGTAGTGTGCCGATGACGGTGAAGGAGCTATTTGAAACTGGCTTGCTGGAAGGAGTACCAGTTGTTTACATGGGTGGGAGGAAGTTTGAAGCTT TTACTCTAAGGGGAGTGATTAAGGATGTAGGGATTCTGTGTGCTTGTGCTTTCTGCAATGGAGTCAGAGTCATTCCACCGTCCCAATTTGAGATACATGC CATCAACCAATACAGACGAGCATCACAATACATTTGTTTCGAGAATGGCAAGAGCCTGCTCGATGTATTGGATGCGTGCAGGTATTCACCTCTTGATTCT TTAGAAGCAACCATTCAAGATGCCATTAGTGGTAGCCCTCAAGAGAAAACTTTCACCTGTAGAAGATGTAAAGGCTCTTTTCCTGCAACTTGTGTTGGCA AAATAGGCCCACTTTGTAGTTCATGTACCAAAGCAAAGTCTAAGAATCCAAGTTCTTCCTGGTCTTTTGTTACAGCGGTTAGCTCTACTGAAGCTGCTCT TACCTCAGAGCTCACTCCAAGCAAGAGAACCAGAAAGTTGAGTATCGGGTTCAAACTTAAAACGATCAATGAGTACCCCAGTCAACACATTGTCGAGAAA AAAGAGCCAATTGAAGATAACTCCAAAGTTGGTTCCATGGAAGTTGATGTTCCGTTTGTTGTTTCCGAAAGAGATCAGCGGTTACACAGAATGGTCTTCG AGGAAGGTGGATTGCCTGATGGGACAGAAGTGGGATACTATGCTCGTGGCAAGAGATTACTTGCTGGCTATAAGCGTGGCTCTGGAATACTCTGTCATTG CTGTAATAGTGAGGTCAGCCCATCAACCTTTGAAGTTCATGCTGGTTGGGCTACTCGGAAGAAACCATATTCATACATTTACACATCCAATGGTGTGTCA CTCCATGAACTGGCACTTTCTCTCTCCAAGAGTCGCAAGTACTCCGCGAATGATAATGATGATCTCTGCATAGTCTGTGCAGATGGTGGTAATCTCGTGC TCTGCGATGGATGTCCCAGGGCCTTTCATAAAGGATGTGCATCTTTGCCGAGTATTCCTCGCGGTGACTGGTACTGCAATTATTGTGAGAGTATGTTTGA GAAAGAAAGGTTTGCTGAGCAGAATGCCGATGCTGTTGCTGCTGGACGGATACCTGGAGTTGATCCAATCGAAGAAATAACCCTGAGATGCATGCGTATC GTAAAAAACATAGAAGCTGAACTAAGCGGATGCGTGTTGTGCAGATGTCACGATTTCAGCAGATCCGGGTTTGGTCCACGTACAATCATACTCTGTGATC AGTGTGAGAAAGAATATCACGTTGGCTGCTTGAGGAGTCACAAAATGGCAAATCTTAAGGAATTGCCACTAGGAGAATGGTTCTGTTGCACAGATTGTAG CACGATCCATTCATCTCTGCAGAATCTACTAAGTCGTGGTGCTGAGAAGCTCCCAGACTCAGATTTGAATAATGTCTTCAAGAATAAGGATCCCAAGAAA GGCTTGGGAACTGCTGAAAACATTGACATCAGATGGCGATTGGTGAGCGGGAAAGTTTCCGGCCCTGAGAATAAGCTGTTACTTTCTCAAGCTTTGGCGA TATTCCAGGAATGTTTCGATCCCATAGTAGATATAGCAACTGGCCGCGATCTGATTCCTCTAATGGTCTACGGTAAGAACTCCAAAGGCCAAGACTACGG AGGAATGTACTGTGCAGTACTAACAGTCAACTCTTTTGTCGTGTCCGCGGGAATGTTGAGGGTTTTCGGGCAAGAAGTTGCCGAGCTTCCTCTAGTTGCA ACCAGTAAAACTAACCATGGCAAGGGCTACTTCCAGCTGCTTTTCTCCTGCATCGAGAACCTGCTATCAAATCTCAAGGTTCCGAGCCTCGTGCTCCCAG CTGCCCATGAGGCTGAATCGATATGGACGAACAAGTTTGGTTTTGAGAGAATCGACTTAGAGCAGCTTACCAAGTACAGGAAAAACTGCTGCCAGATCGT CTCCTTCGAAGGAACGTCGATGCTTCATAAAGCAGTTCCCCTCAGAATTAGGGGTGGCAAGCCTAGTCGTCTCGTCGGAGGAAGAGATCTATATGGACAC CAAATGAAGTTGCATATGGATCAAAGAGATGTTTTGAAACAGAATTCAGCTCCGGCGCCTGCTCCAGGGGAGGTGGGAGCTCAGGCGGTGGCGATACAGG TGGCCGGAGACCAAGCTGCTTTCTACAGATGTGGGTTTTATGGAGCTCAAGATACACTGCACGATGACCACGGGTTTTATGGAGGCATTACTACAGAGGG TGTTTCATTCAACGATCTATTGATTTTATCTTTGGGAATGCACGACTCATTCTTTGAGAGCTGCACAATCAACTCGATTGCAATCCCACCAACATCAGAT TCAGGAGCCACTGGCTCAATTACAGCTCAGGCGAGGCAATCCTCCGGTGAAGACACTGGCTTTTCGTTCGTCAATTCCAAGATAAACGGAACCAGACAAG TGTGGCTAGGAAGGGCATGGGGAACTTACTCCAAGGTCGTGTTCATAAGGACTTACATGTCGGATGCCGCGTCTCCTGACGGGTGGAATGACTGGAGAGA CCCTTCTAGAGATCAGTACGCAATCTTTTTAGCTTCAGATGAGCCATGGATGACAGCCAGCAGCTGGACAATAACCCAACAACGACGTTACCGTCTTCTC ATTCATTCTTCTTCTTCGTCTCCGTCTTCCGTCATCACGCCGTTACTGATCTCTGTCGCAGGCGTCACCGGTACGTTCACGGCGGTGGATCAGCAAGGGG TGAAAGTGATGAGGGGGATCCCGGCGGTTTTGTTCTACTCAGAGGGAGATAACGGCAGGTTGACGGCGGCGAATCCTCCATCAGATGAGAAGAAGAATAA GAAGGTCAACGACTGCGTGATTTGTATAGGGGAGCTGGAGGAAGGCGAAACGAAGCGTTTCATGCCGAGATGTGGACACGTGTTCCATGCTTCCTGCGTG GACCACTGGCTGTTGGCCCAGTCCAGCTGTCTGTGTTCAGATTGTTTCGCCCTCTAA
AA sequence Show only first row Show all	>Lus10035553 pacid=23147418 polypeptide=Lus10035553 locus=Lus10035553.g ID=Lus10035553.BGIv1.0 annot-version=v1.0 MALADSLSEVIHSQLATASTAAAAAAASLLTQPPSSEITELEEEFGAAKVNGFFVYSRVKKSGRARDDDGIAADDDGCESKRIRCLELKHGEVARCNGGA SIWKDEAKCESTVHGGPDNGNLRICIHKGNKVNRSKMRKFTRSAIKLSVESEVEVDVTGVESVGSGSVSTVNVEVIGSEGSAAVIAPPKKNLEMKMSKKI ALRSVPMTVKELFETGLLEGVPVVYMGGRKFEAFTLRGVIKDVGILCACAFCNGVRVIPPSQFEIHAINQYRRASQYICFENGKSLLDVLDACRYSPLDS LEATIQDAISGSPQEKTFTCRRCKGSFPATCVGKIGPLCSSCTKAKSKNPSSSWSFVTAVSSTEAALTSELTPSKRTRKLSIGFKLKTINEYPSQHIVEK KEPIEDNSKVGSMEVDVPFVVSERDQRLHRMVFEEGGLPDGTEVGYYARGKRLLAGYKRGSGILCHCCNSEVSPSTFEVHAGWATRKKPYSYIYTSNGVS LHELALSLSKSRKYSANDNDDLCIVCADGGNLVLCDGCPRAFHKGCASLPSIPRGDWYCNYCESMFEKERFAEQNADAVAAGRIPGVDPIEEITLRCMRI VKNIEAELSGCVLCRCHDFSRSGFGPRTIILCDQCEKEYHVGCLRSHKMANLKELPLGEWFCCTDCSTIHSSLQNLLSRGAEKLPDSDLNNVFKNKDPKK GLGTAENIDIRWRLVSGKVSGPENKLLLSQALAIFQECFDPIVDIATGRDLIPLMVYGKNSKGQDYGGMYCAVLTVNSFVVSAGMLRVFGQEVAELPLVA TSKTNHGKGYFQLLFSCIENLLSNLKVPSLVLPAAHEAESIWTNKFGFERIDLEQLTKYRKNCCQIVSFEGTSMLHKAVPLRIRGGKPSRLVGGRDLYGH QMKLHMDQRDVLKQNSAPAPAPGEVGAQAVAIQVAGDQAAFYRCGFYGAQDTLHDDHGFYGGITTEGVSFNDLLILSLGMHDSFFESCTINSIAIPPTSD SGATGSITAQARQSSGEDTGFSFVNSKINGTRQVWLGRAWGTYSKVVFIRTYMSDAASPDGWNDWRDPSRDQYAIFLASDEPWMTASSWTITQQRRYRLL IHSSSSSPSSVITPLLISVAGVTGTFTAVDQQGVKVMRGIPAVLFYSEGDNGRLTAANPPSDEKKNKKVNDCVICIGELEEGETKRFMPRCGHVFHASCV DHWLLAQSSCLCSDCFAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	0	1
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	1.7	0.8836
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	2.2	0.8367
AT2G35920			RNA helicase family protein (....		Lus10009660 [exp]	4.9	0.8424
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	4.9	0.8408
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	5.3	0.8562
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10003684 [exp]	7.1	0.8299
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	9.5	0.8229
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10002949 [exp]	10.8	0.7747
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	11.5	0.8322
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Lus10033455 [exp]	11.7	0.8348

Compare expression of checked genes

Lus10035553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.