Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36670 580 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT5G22850 523 / 1e-174 Eukaryotic aspartyl protease family protein (.1) AT2G36660 513 / 6e-169 PAB7 poly(A) binding protein 7 (.1) AT1G08210 479 / 2e-157 Eukaryotic aspartyl protease family protein (.1) AT4G34110 443 / 5e-142 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G22760 423 / 4e-134 PAB3 poly(A) binding protein 3 (.1) AT1G49760 415 / 1e-130 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G71770 413 / 6e-130 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G23350 409 / 1e-128 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G16380 328 / 4e-100 PAB6 poly(A) binding protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027733 [exp] 1063 / 0 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10014392 [exp] 819 / 0 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 815 / 0 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10027732 [exp] 804 / 0 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 648 / 0 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021397 [exp] 504 / 5e-167 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 490 / 2e-161 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010042 [exp] 434 / 6e-138 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 427 / 2e-135 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118800 [exp] 645 / 0 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 619 / 0 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 538 / 3e-180 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 526 / 1e-175 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G304000 [exp] 426 / 2e-135 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.014G025400 [exp] 411 / 1e-129 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.009G099300 [exp] 410 / 4e-129 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G124200 [exp] 409 / 1e-128 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G062700 [exp] 400 / 2e-125 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.005G198500 [exp] 397 / 2e-124 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF00658 [flax] [poplar] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Lus10035556 pacid=23147634 polypeptide=Lus10035556 locus=Lus10035556.g ID=Lus10035556.BGIv1.0 annot-version=v1.0 ATGCGCCCTTCTTGGTCGCCGACGTTGCTTATAACGACACTCATCGTTCTTCTCTCGCTGGCGGCAGCTAACAACAGTCTCGGCCTTCTCCACCTGGAGA GAGCTTTCCCGTTGGATTACACCGTCGATATCGAGCAACTCAGAGCTTGGGACAGAGCTAGGCACTCCAGGCTCTTGCAAGGATTCGTCGGCGGCGTAGT CGACTTCTCCGTCCAAGGCTCCCCCGATCCTTACCTCGTCGGGCTTTACTTCACAAAGGTGAAACTAGGTTCTCCTCCTAGAGAGTTCAACGTGCAGATT GATACTGGGAGTGATGTGTTGTGGGTTAACTGTAATTCCTGCGAGAATTGTCCACGCTCCAGTGGACTTGGGATTCAGCTAAATTTCTTTGATTCTGCTA GCTCGTCAACAACTGGGCCGGTTCCTTGTGCGGATCCAGTATGTGTGGCAGCGGCTCGAACCAGTGCGACTCAGTGTTCGGAGAGGGGTCAGTGTGCCTA CACGTTCCAGTATGGAGATGGGAGTGGAACCTCGGGTGTTTATGTGACAGATACGTTTCATTTGGATTCGATTTTGACTGGATCGATGATTGTTAATTCG TCAGCTGTTATCGTATTTGGTTGTAGCAGCTACCAATCTGGTGACTTGACCAAGACCGACAAAGCAGTTGATGGAATTTTCGGATTTGGCCAAGGATCTC TCTCTGTTATATCGCAATTATCATCCAAGGGGATTACGCCTAGAGTTTTCTCTCATTGCTTGAAAGGAGAGGGCAGTGGAGGTGGCACATTTGTTCTTGG CGAGATTTTGGAGCCAGGGATCATCTACACTTCACTAGTCCCGTCACAGGCTCATTACAATTTATATCTACAGAGCATTGCTGTCAATGGACAGATCTTA CCTGTTGATCCAGTGGCCTTCGCGACATCAACTAACCGAGGAACGATTGTCGACACCGGAACCACTTTGGCATACCTTGTGGAAGAAGCTTATGACCCAT TTGTCGGCGCGGTTACTGCTGCCGTCTCACAATCAGTGACTCCCACCATAAATAAGGGAACCCAGTGTTACCTAGTCAGTTCCAGTGTTTCTAGTCTATT TCCTCCCGTTAGCTTCAATTTCGTAGGTGGTGCTTCCATGGTGTTAAAACCGGAGGAGTACCTTGTTGAACAAGGTTCCTATCAGGATGGCGGTGGAATG TGGTGCATTGGTTTCCAGAAGGGTCAAGGACTAACCATTTTAGGAGATCTTGTTCTTAAAGACAAGATATTCGTCTACGATTTGGTCCATCAGCGAATCG GGTGGGCTAACTACGACTGCTCGTTATCGGTAAACGTGTCTGTAACTTCTAGCAAAGACTTCGTCAATGCCGGACAGCGAACGGCCCAACTAACCCCTCC GCAGCGTCCATGCAAAATCCGCACACAGTACACAGACACCAACACTCTCACTTCTCTCACAACAAACCAAAACAAAAAACTCCGGCCTCCTCCTTCCGCC GCCAACCACCGTCCGCCGCCGTTCCCCTTCCTCCGCTGCATTCTCCGTCCACCTGTGCGGGTGCGAGCACCAGATTCGGCGGCTACCGCGACGACGACGA CCGTAGCCGGAGCGTCTCTGTACGTTGGAGACCTGCACCCTGACGTCGACGACAAGCAGCTATTCCAGGCGTTTGGAGAGTTCAAGAGCATTTCATCGGT CCGCGTGTGTCGAGACTCCCCTACCGGGAGGTCTCTCTGTTACGGCTACGTAAACTTCATCGTCCCGGAAGACGCTGTGAAAGCTATGGAGACGAAGAAC CACACCCTTTTGAATGGGAAAGCGATGAGGGTTTCGTGGTCACACCGCGATCCTGATGCAAGAAAGAGTGGAGTAGGAAATGTGTTTGTTAAGAATTTGA GTGAATCTGTTACGAATGCTGCTGTGCAAGAGCTGTTCGGCAAACATGGGAATATTGTGTCTTGCAAAATAGCAACCTTTGATGATGGAAGGACTAAAGG CCATGGCTTTGTCCAGTTTGATAACGAGGCATCTGCAAATGCTGCTATTGAAAAGCTGAATGGCTCAATGTTTTATGATAAACAGATATATGTTGGAAAG TTTATTAAGAGAAGTGATCGAGCTTTACCCAGCCCTGATGCTAAATACACTAATCTATATGTCAAGAACTTGGAACTAGAAGTCACGGAAGAGCTTCTAC ATGAGAAATTCTCCAAGTATGGGACCGTGTCAAGCTTGGTTATCGCTAAGGATGACAATGGATCCTCTAGGGGTTTTGGCTTTGTGAATTTCGATGATGC TGATGATGCTAAGCGTGCTGTGGAAGCAATGAATGGGATTGAGCTTGGATCGAAGATTCTATTTGTAGGAAGGGCACAGAAGAAAGCTGAGCGGGAGCAG ATTCTGCGCCTTCAGTTTGAAGAAAAACGCATGCAGCAGATTCAGAAGTACAAGGGTTCAAATGTGTATGTTAAGAACATTGATGATGATGTCACTGATG AAGAGCTGAGAGACCACTTCAGCCAGTGTGGCACAATTACATCCTCAAAGCTTATGAGGGACGAAAAAGGTATCAGTAAGGGATTTGGCTTTGTCTGCTT CTCCAATCCCGAGGAGGCGAATAAAGCAGTGACCACATTTCATGGGTACATGCTTTGCCGGAAGCCACTGTATGTGGCTATTGCTCAAAGGAAGGAAGAT AGACAAGCCCAACTACACGTGCAGTATGCACAACGCATGGTTGGACTACCTGGACCTTCAACTGCTGTTATCCCCGCTGGATATCCACTCTATTATACAG GTCCGCAGGGCCTTGTTTCGCAAGTATCTCCCCGACCTGGACTTATGTACCCGCCTTTGGGTATTCGGCCAGGATGGAGAGCTAATGGCTTCGCTCCTCC AAATAGACCAGTGTTTCAACCTGGTCAACTTCCTATGATGCCTCATGCTCAAAGGCAACAAAGGCAAAACCGGGGTAGGATGAACGGAAACATGCTTCCT CATGGCAGTGCCTCCTATATGCAGCCTGCTCCTCAACCTCTACCTTCCCTGAAAGATCAAAACAACCAGCTCACTTCTCAGGCTAAGTATGTCCCAAATG GCCGTTCTCGCGAGCTAACCAAATCAGCTGGCATATCATCACCTACTCCGGCTTCCACAGGGCAGCCTGGTCCTTTAGGAGGAGTAGACATGCTGAGCAC CATGCTTGCTGCTTCTTCCCCTGATCTTCAGAAACAAATGCTTGGGGAGCGCCTCTACCCTTGCGTTGAGTTGTACAACGCTGAGCAGACAGCAAAGATA ACTGGCATGCTGCTGGAGATGGACAATTCAGAGCTATTGCTGTTGCTGGAAACACCAAAATCGTTGGAAGCCAAGGTGAACGAAGCTGTTCAAGTGCTTA AGCTCTCCGATGCTGCAGCTTCAGCTAAAGCATCCTCCGCCCCTTCTGCAGCCAAGATAACACCAACACCAACACCACCGGGATGCATTCTTCTTCCGCC AAGTACCATCTCTCTGCCGAGGTTGCTGTCAACTGATGGAAAAACTGCTTACTGA
AA sequence Show only first row Show all	>Lus10035556 pacid=23147634 polypeptide=Lus10035556 locus=Lus10035556.g ID=Lus10035556.BGIv1.0 annot-version=v1.0 MRPSWSPTLLITTLIVLLSLAAANNSLGLLHLERAFPLDYTVDIEQLRAWDRARHSRLLQGFVGGVVDFSVQGSPDPYLVGLYFTKVKLGSPPREFNVQI DTGSDVLWVNCNSCENCPRSSGLGIQLNFFDSASSSTTGPVPCADPVCVAAARTSATQCSERGQCAYTFQYGDGSGTSGVYVTDTFHLDSILTGSMIVNS SAVIVFGCSSYQSGDLTKTDKAVDGIFGFGQGSLSVISQLSSKGITPRVFSHCLKGEGSGGGTFVLGEILEPGIIYTSLVPSQAHYNLYLQSIAVNGQIL PVDPVAFATSTNRGTIVDTGTTLAYLVEEAYDPFVGAVTAAVSQSVTPTINKGTQCYLVSSSVSSLFPPVSFNFVGGASMVLKPEEYLVEQGSYQDGGGM WCIGFQKGQGLTILGDLVLKDKIFVYDLVHQRIGWANYDCSLSVNVSVTSSKDFVNAGQRTAQLTPPQRPCKIRTQYTDTNTLTSLTTNQNKKLRPPPSA ANHRPPPFPFLRCILRPPVRVRAPDSAATATTTTVAGASLYVGDLHPDVDDKQLFQAFGEFKSISSVRVCRDSPTGRSLCYGYVNFIVPEDAVKAMETKN HTLLNGKAMRVSWSHRDPDARKSGVGNVFVKNLSESVTNAAVQELFGKHGNIVSCKIATFDDGRTKGHGFVQFDNEASANAAIEKLNGSMFYDKQIYVGK FIKRSDRALPSPDAKYTNLYVKNLELEVTEELLHEKFSKYGTVSSLVIAKDDNGSSRGFGFVNFDDADDAKRAVEAMNGIELGSKILFVGRAQKKAEREQ ILRLQFEEKRMQQIQKYKGSNVYVKNIDDDVTDEELRDHFSQCGTITSSKLMRDEKGISKGFGFVCFSNPEEANKAVTTFHGYMLCRKPLYVAIAQRKED RQAQLHVQYAQRMVGLPGPSTAVIPAGYPLYYTGPQGLVSQVSPRPGLMYPPLGIRPGWRANGFAPPNRPVFQPGQLPMMPHAQRQQRQNRGRMNGNMLP HGSASYMQPAPQPLPSLKDQNNQLTSQAKYVPNGRSRELTKSAGISSPTPASTGQPGPLGGVDMLSTMLAASSPDLQKQMLGERLYPCVELYNAEQTAKI TGMLLEMDNSELLLLLETPKSLEAKVNEAVQVLKLSDAAASAKASSAPSAAKITPTPTPPGCILLPPSTISLPRLLSTDGKTAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36670			Eukaryotic aspartyl protease f...		Lus10035556 [exp]	0	1
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	17.0	0.8421
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	20.7	0.8192
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Lus10020897 [exp]	21.3	0.8375
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	29.1	0.8101
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10005185 [exp]	29.6	0.8124
AT1G56140			Leucine-rich repeat transmembr...		Lus10010927 [exp]	35.7	0.7908
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10037784 [exp]	36.2	0.7972
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10027084 [exp]	44.0	0.7880
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	48.1	0.8097
AT4G32175			PNAS-3 related (.1)		Lus10042121 [exp]	48.4	0.8079

Compare expression of checked genes

Lus10035556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.