Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03910 776 / 0 unknown protein AT2G36815 77 / 4e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027731 [exp] 1023 / 0 AT1G03910 875 / 0.0 unknown protein Lus10030000 [exp] 788 / 0 AT1G03910 713 / 0.0 unknown protein Lus10027730 [exp] 355 / 4e-120 ND 328 / 7e-110 Lus10035559 [exp] 341 / 7e-115 ND 301 / 4e-100 Lus10021530 [exp] 266 / 1e-85 AT1G03910 253 / 2e-81 unknown protein Lus10027605 [exp] 253 / 7e-81 AT1G03910 242 / 4e-77 unknown protein Lus10035324 [exp] 118 / 1e-31 AT1G03910 116 / 4e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118700 [exp] 840 / 0 AT1G03910 849 / 0.0 unknown protein Potri.001G242900 [exp] 248 / 1e-75 AT1G03910 250 / 1e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10312 [flax] [poplar] Cactin_mid Conserved mid region of cactin PF09732 [flax] [poplar] CactinC_cactus Cactus-binding C-terminus of cactin protein
Representative CDS sequence Show only first row Show all	>Lus10035558 pacid=23147466 polypeptide=Lus10035558 locus=Lus10035558.g ID=Lus10035558.BGIv1.0 annot-version=v1.0 ATGGGGAGCAGAACCAAGAGAGGCCGGAAAAGAAAATTGGAAGATTCTGAGTCCGAGTCTTCTGTGAGTGAGTTCGAGGACTCTGACTCTTCTCCTCAGA GGAGATCCAGGAGCCGCCGCGAGCGTAGTAGCCATGGCCGGAGCAGAAGCAGCCGCGGTAGAAAAGGGAGTTCCAGTGACTCTGGGAGTGACAGTGATGA TAGACGCAAGAAGAAGAAGTCTTCAAGAAAGATAACTGATGATGAAATTGCTGAGTACATGGCGAAGAAAGCTCAGCGAAAGGCTATGAAGGTTGCCAAG AAGTTGAAGGGGCAAACGGTTTCGGGATATTCAAACGACTCTAATCCTTTCGGTGATTCAAACTTAAATGAAAAATTTGTATGGAGGAAGAAGATTGAGA AAGATGTTTATCAAGGGGCGCCACTAGATGATTTTTCGGTTAAAGCAGAGAGAAAGAAACAAAAAGAAAGGATGGCAGAGATTGAAAAGGTCAAAAAGAG AAGGGAGGAGAGGGCACTTGGAAAAGCACAACACGAAGAAGAAATGGCATTGTTGGCTAGAGAACGTGCACGGGCTGAATTCCAAGACTTGGAGAAGAAG GAAGATGAGTTCCATTACGAGCAAAGCAAGTTCAGGTCTGAGATCAGGCTTCGTGAAGGGCGAGTGAAACCAATCGATGTGTTGACAAAGCACTTAAATG TCTCAGACGATCTCGACATAGAAATAAATGAACCCTATATGGTCTTTAAGGGTTTGACAGTTAAAGAAATGGAAGAACTTCATGATGACATCAAAATGCA TCTGGAAATGGAGCGAACAACACAGACACATGTGGATTATTGGGAGGCCCTATTGGTGGTCTGCAACTGGGAATTATCAGAAGCTCGGAAAAAAGATGCT CTCGACAGGGCAAGGGTACGAGGCGAGGAACCTCCTGCCGAGTTGCTTGCAGAAGACAGAGGTATGCATGCTGGCATTGAAGCAGATGTGAGAGATCTTT TGGAAGCTAAAACCTCCCAGGAGCTTGATGCATCGAAATCTAAGATTGAGGAGTTGTTGAGTTCTGGAGAAGCAAGAGTAGTAGAGTATTGGCAAGCTGT TCTCAAGCGACTCCAGATTTACAAAGCAAAGGCCATTCTGAAAGAAATTCACGCGAAGATGTTGCGAACGCATTTGAAACGTCTTGAACCAACTCTAGAA GCCGAAGACAAATGGGACAGTGGCAACGAGTTGAAGCCCATCGAAGAGGAGAGTGAGCCTGAGGAGAAAGAAGATCTCGAGCCCGTTCATCGCGAGCCAG TGGAGGAAACTCAAGAGGCAGAAGAGGAAGCTGGATCGTTCTCCCCAGAGCTGTTGCATGGCGATGAAGACGAAGAAGAAGCCGTTGATCCTGAAGAGGA TAAAGCTTTACTGGAGAAGAAGCGTTCAGCTGTGCTCGAAGAACAGCAGAGGCGCATTCGAGAAGCGATGGCATCAAAACCACCTCTTCCACCAGCGGAC AACTTTGAGATGAAGGCCATTAAAGCCATGGGAGTGATGGAGGAAGGCGATGCGGTGTTTGGGTCGGGAGCTGAAGTGAATCTGGACTCGGCAGTTTACT GGTGGCACGACAAGTACAGGCCGAGGAAGCCAAAGTACTTCAACCGAGTCCACACCGGTTACGAGTGGAACAAGTACAACCAGACTCACTACGACCACGA CAACCCGCCACCGAAGATCGTTCAAGGATACAAGTTCAACATCTTCTACCCGGACCTGGTGGACAAGACCAAGGCTCCAACCTACAAGATCGACAAGGAT GGAAGCAGCGACGAGACGTGCATCATCACGTTCCATGCTGGACCGCCTTACGAGGATATCGCGTACCGGATAGTGAACAAGGAGTGGGAGTACTCTCACA AGAAGGGGTTCAAGTGCACGTTCGAGCGCGGGATTCTGCATGTCTACTTCAACTTCAAACGCCACCGCTACCGGCGGTAA
AA sequence Show only first row Show all	>Lus10035558 pacid=23147466 polypeptide=Lus10035558 locus=Lus10035558.g ID=Lus10035558.BGIv1.0 annot-version=v1.0 MGSRTKRGRKRKLEDSESESSVSEFEDSDSSPQRRSRSRRERSSHGRSRSSRGRKGSSSDSGSDSDDRRKKKKSSRKITDDEIAEYMAKKAQRKAMKVAK KLKGQTVSGYSNDSNPFGDSNLNEKFVWRKKIEKDVYQGAPLDDFSVKAERKKQKERMAEIEKVKKRREERALGKAQHEEEMALLARERARAEFQDLEKK EDEFHYEQSKFRSEIRLREGRVKPIDVLTKHLNVSDDLDIEINEPYMVFKGLTVKEMEELHDDIKMHLEMERTTQTHVDYWEALLVVCNWELSEARKKDA LDRARVRGEEPPAELLAEDRGMHAGIEADVRDLLEAKTSQELDASKSKIEELLSSGEARVVEYWQAVLKRLQIYKAKAILKEIHAKMLRTHLKRLEPTLE AEDKWDSGNELKPIEEESEPEEKEDLEPVHREPVEETQEAEEEAGSFSPELLHGDEDEEEAVDPEEDKALLEKKRSAVLEEQQRRIREAMASKPPLPPAD NFEMKAIKAMGVMEEGDAVFGSGAEVNLDSAVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYKIDKD GSSDETCIITFHAGPPYEDIAYRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03910			unknown protein		Lus10035558 [exp]	0	1
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10017186 [exp]	2.8	0.9348
AT5G67320		HOS15	high expression of osmotically...		Lus10010384 [exp]	4.1	0.9234
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	5.7	0.9292
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10034469 [exp]	7.9	0.9314
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	8.0	0.9359
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010479 [exp]	8.7	0.9347
AT2G41945			unknown protein		Lus10021080 [exp]	11.2	0.9201
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	11.7	0.9341
AT5G57370			unknown protein		Lus10001311 [exp]	13.6	0.9196
AT5G37190		CIP4	COP1-interacting protein 4 (.1...		Lus10006453 [exp]	14.4	0.9235

Compare expression of checked genes

Lus10035558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.